Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22435 and HSERO_RS22440 are separated by 315 nucleotides HSERO_RS22440 and HSERO_RS22445 overlap by 4 nucleotides HSERO_RS22445 and HSERO_RS22450 are separated by 223 nucleotides
HSERO_RS22435: HSERO_RS22435 - zinc-binding dehydrogenase, at 5,135,503 to 5,136,552
_RS22435
HSERO_RS22440: HSERO_RS22440 - hypothetical protein, at 5,136,868 to 5,137,320
_RS22440
HSERO_RS22445: HSERO_RS22445 - hypothetical protein, at 5,137,317 to 5,137,745
_RS22445
HSERO_RS22450: HSERO_RS22450 - aldose 1-epimerase, at 5,137,969 to 5,139,033
_RS22450
Position (kb) 5136
5137
5138 Strain fitness (log2 ratio) -2
-1
0
1 at 5135.960 kb on + strand, within HSERO_RS22435 at 5136.257 kb on - strand, within HSERO_RS22435 at 5136.257 kb on - strand, within HSERO_RS22435 at 5136.278 kb on - strand, within HSERO_RS22435 at 5136.322 kb on - strand, within HSERO_RS22435 at 5136.619 kb on + strand at 5136.619 kb on + strand at 5136.661 kb on - strand at 5136.904 kb on - strand at 5136.926 kb on + strand, within HSERO_RS22440 at 5136.932 kb on - strand, within HSERO_RS22440 at 5137.277 kb on - strand at 5137.716 kb on + strand at 5137.926 kb on - strand at 5138.051 kb on + strand at 5138.066 kb on + strand at 5138.074 kb on - strand at 5138.113 kb on - strand, within HSERO_RS22450 at 5138.113 kb on - strand, within HSERO_RS22450 at 5138.297 kb on - strand, within HSERO_RS22450
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 5,135,960 + HSERO_RS22435 0.44 +0.3 5,136,257 - HSERO_RS22435 0.72 +0.4 5,136,257 - HSERO_RS22435 0.72 +0.4 5,136,278 - HSERO_RS22435 0.74 -1.1 5,136,322 - HSERO_RS22435 0.78 -0.2 5,136,619 + -1.1 5,136,619 + +1.3 5,136,661 - +0.3 5,136,904 - +0.1 5,136,926 + HSERO_RS22440 0.13 -0.9 5,136,932 - HSERO_RS22440 0.14 -2.2 5,137,277 - -1.5 5,137,716 + +0.1 5,137,926 - -0.5 5,138,051 + -0.0 5,138,066 + +0.4 5,138,074 - +1.3 5,138,113 - HSERO_RS22450 0.14 +0.2 5,138,113 - HSERO_RS22450 0.14 +1.0 5,138,297 - HSERO_RS22450 0.31 -1.0
Or see this region's nucleotide sequence