Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19830 and HSERO_RS19835 overlap by 1 nucleotides HSERO_RS19835 and HSERO_RS19840 overlap by 4 nucleotides HSERO_RS19840 and HSERO_RS19845 are separated by 69 nucleotides
HSERO_RS19830: HSERO_RS19830 - sugar phosphate isomerase, at 4,554,244 to 4,555,272
_RS19830
HSERO_RS19835: HSERO_RS19835 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 4,555,272 to 4,555,826
_RS19835
HSERO_RS19840: HSERO_RS19840 - membrane protein, at 4,555,823 to 4,556,431
_RS19840
HSERO_RS19845: HSERO_RS19845 - ABC transporter substrate-binding protein, at 4,556,501 to 4,557,106
_RS19845
Position (kb) 4555
4556 Strain fitness (log2 ratio) -2
-1
0
1 at 4555.241 kb on + strand at 4555.382 kb on + strand, within HSERO_RS19835 at 4555.382 kb on + strand, within HSERO_RS19835 at 4555.541 kb on + strand, within HSERO_RS19835 at 4555.633 kb on + strand, within HSERO_RS19835 at 4555.701 kb on + strand, within HSERO_RS19835 at 4556.321 kb on + strand, within HSERO_RS19840 at 4556.403 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 4,555,241 + -0.2 4,555,382 + HSERO_RS19835 0.20 -0.0 4,555,382 + HSERO_RS19835 0.20 -1.3 4,555,541 + HSERO_RS19835 0.48 -0.2 4,555,633 + HSERO_RS19835 0.65 -1.2 4,555,701 + HSERO_RS19835 0.77 -1.8 4,556,321 + HSERO_RS19840 0.82 -0.2 4,556,403 + -1.2
Or see this region's nucleotide sequence