Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08395 and HSERO_RS08400 are separated by 58 nucleotides HSERO_RS08400 and HSERO_RS08405 are separated by 125 nucleotides HSERO_RS08405 and HSERO_RS08410 are separated by 745 nucleotides
HSERO_RS08395: HSERO_RS08395 - 2-aminoadipate aminotransferase, at 1,912,130 to 1,913,572
_RS08395
HSERO_RS08400: HSERO_RS08400 - glutathione S-transferase, at 1,913,631 to 1,914,302
_RS08400
HSERO_RS08405: HSERO_RS08405 - membrane protein, at 1,914,428 to 1,915,756
_RS08405
HSERO_RS08410: HSERO_RS08410 - hypothetical protein, at 1,916,502 to 1,916,930
_RS08410
Position (kb) 1914
1915
1916 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1913.591 kb on + strand at 1913.752 kb on + strand, within HSERO_RS08400 at 1913.770 kb on - strand, within HSERO_RS08400 at 1913.833 kb on - strand, within HSERO_RS08400 at 1913.847 kb on - strand, within HSERO_RS08400 at 1913.987 kb on + strand, within HSERO_RS08400 at 1914.121 kb on - strand, within HSERO_RS08400 at 1914.158 kb on - strand, within HSERO_RS08400 at 1914.205 kb on - strand, within HSERO_RS08400 at 1914.288 kb on + strand at 1914.841 kb on + strand, within HSERO_RS08405 at 1915.116 kb on + strand, within HSERO_RS08405 at 1915.823 kb on + strand at 1915.984 kb on + strand at 1916.016 kb on + strand at 1916.297 kb on - strand at 1916.558 kb on - strand, within HSERO_RS08410 at 1916.728 kb on + strand, within HSERO_RS08410
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,913,591 + -0.1 1,913,752 + HSERO_RS08400 0.18 -0.2 1,913,770 - HSERO_RS08400 0.21 +1.7 1,913,833 - HSERO_RS08400 0.30 +1.1 1,913,847 - HSERO_RS08400 0.32 +0.1 1,913,987 + HSERO_RS08400 0.53 +0.4 1,914,121 - HSERO_RS08400 0.73 +0.6 1,914,158 - HSERO_RS08400 0.78 -0.3 1,914,205 - HSERO_RS08400 0.85 +0.5 1,914,288 + +0.5 1,914,841 + HSERO_RS08405 0.31 -5.0 1,915,116 + HSERO_RS08405 0.52 -3.5 1,915,823 + +0.2 1,915,984 + +1.7 1,916,016 + -0.0 1,916,297 - -0.6 1,916,558 - HSERO_RS08410 0.13 +1.1 1,916,728 + HSERO_RS08410 0.53 +0.1
Or see this region's nucleotide sequence