Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03935 and HSERO_RS03940 are separated by 343 nucleotides HSERO_RS03940 and HSERO_RS03945 are separated by 149 nucleotides HSERO_RS03945 and HSERO_RS03950 are separated by 93 nucleotides
HSERO_RS03935: HSERO_RS03935 - type III secretion protein, at 864,941 to 867,028
_RS03935
HSERO_RS03940: HSERO_RS03940 - hypothetical protein, at 867,372 to 868,112
_RS03940
HSERO_RS03945: HSERO_RS03945 - hypothetical protein, at 868,262 to 868,645
_RS03945
HSERO_RS03950: HSERO_RS03950 - type III secretion HrpQ protein, at 868,739 to 869,773
_RS03950
Position (kb) 867
868
869 Strain fitness (log2 ratio) -2
-1
0
1
2 at 866.497 kb on + strand, within HSERO_RS03935 at 866.512 kb on + strand, within HSERO_RS03935 at 866.520 kb on - strand, within HSERO_RS03935 at 866.532 kb on - strand, within HSERO_RS03935 at 866.609 kb on + strand, within HSERO_RS03935 at 866.690 kb on + strand, within HSERO_RS03935 at 866.775 kb on - strand, within HSERO_RS03935 at 866.957 kb on + strand at 866.992 kb on + strand at 867.264 kb on - strand at 867.264 kb on - strand at 867.322 kb on - strand at 867.412 kb on - strand at 867.551 kb on + strand, within HSERO_RS03940 at 867.668 kb on + strand, within HSERO_RS03940 at 867.894 kb on + strand, within HSERO_RS03940 at 867.914 kb on - strand, within HSERO_RS03940 at 868.066 kb on + strand at 868.072 kb on - strand at 868.099 kb on - strand at 868.106 kb on + strand at 868.737 kb on - strand at 868.836 kb on + strand at 868.849 kb on - strand, within HSERO_RS03950 at 868.870 kb on + strand, within HSERO_RS03950 at 868.905 kb on - strand, within HSERO_RS03950
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 866,497 + HSERO_RS03935 0.75 -0.4 866,512 + HSERO_RS03935 0.75 +1.0 866,520 - HSERO_RS03935 0.76 -1.8 866,532 - HSERO_RS03935 0.76 +1.3 866,609 + HSERO_RS03935 0.80 +1.5 866,690 + HSERO_RS03935 0.84 +1.0 866,775 - HSERO_RS03935 0.88 +1.8 866,957 + +0.2 866,992 + +0.5 867,264 - +0.2 867,264 - -0.2 867,322 - -0.3 867,412 - -0.3 867,551 + HSERO_RS03940 0.24 -0.7 867,668 + HSERO_RS03940 0.40 +0.3 867,894 + HSERO_RS03940 0.70 -0.1 867,914 - HSERO_RS03940 0.73 -0.7 868,066 + -1.6 868,072 - +1.2 868,099 - -1.8 868,106 + +0.0 868,737 - -1.8 868,836 + +0.3 868,849 - HSERO_RS03950 0.11 -1.5 868,870 + HSERO_RS03950 0.13 -1.0 868,905 - HSERO_RS03950 0.16 -0.8
Or see this region's nucleotide sequence