Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03470 and HSERO_RS03475 are separated by 39 nucleotides HSERO_RS03475 and HSERO_RS03480 are separated by 164 nucleotides HSERO_RS03480 and HSERO_RS03485 are separated by 85 nucleotides HSERO_RS03485 and HSERO_RS03490 are separated by 70 nucleotides HSERO_RS03490 and HSERO_RS03495 overlap by 4 nucleotides
HSERO_RS03470: HSERO_RS03470 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 755,883 to 756,989
_RS03470
HSERO_RS03475: HSERO_RS03475 - NUDIX hydrolase, at 757,029 to 757,526
_RS03475
HSERO_RS03480: HSERO_RS03480 - NAD(P) transhydrogenase subunit alpha, at 757,691 to 758,806
_RS03480
HSERO_RS03485: HSERO_RS03485 - aspartate decarboxylase, at 758,892 to 759,254
_RS03485
HSERO_RS03490: HSERO_RS03490 - NAD(P) transhydrogenase, at 759,325 to 759,639
_RS03490
HSERO_RS03495: HSERO_RS03495 - NAD(P) transhydrogenase subunit beta, at 759,636 to 761,075
_RS03495
Position (kb) 757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 757.138 kb on - strand, within HSERO_RS03475 at 757.182 kb on + strand, within HSERO_RS03475 at 757.204 kb on + strand, within HSERO_RS03475 at 757.399 kb on + strand, within HSERO_RS03475 at 758.173 kb on + strand, within HSERO_RS03480 at 758.219 kb on + strand, within HSERO_RS03480 at 758.361 kb on + strand, within HSERO_RS03480 at 758.403 kb on + strand, within HSERO_RS03480 at 758.490 kb on + strand, within HSERO_RS03480 at 758.618 kb on + strand, within HSERO_RS03480 at 758.653 kb on + strand, within HSERO_RS03480 at 758.743 kb on - strand at 758.859 kb on - strand at 759.343 kb on - strand at 759.482 kb on + strand, within HSERO_RS03490 at 759.615 kb on + strand at 759.657 kb on + strand at 759.710 kb on - strand at 759.797 kb on + strand, within HSERO_RS03495
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 757,138 - HSERO_RS03475 0.22 -0.1 757,182 + HSERO_RS03475 0.31 -0.0 757,204 + HSERO_RS03475 0.35 -0.1 757,399 + HSERO_RS03475 0.74 -1.5 758,173 + HSERO_RS03480 0.43 -1.6 758,219 + HSERO_RS03480 0.47 -2.0 758,361 + HSERO_RS03480 0.60 -1.0 758,403 + HSERO_RS03480 0.64 -1.4 758,490 + HSERO_RS03480 0.72 -0.1 758,618 + HSERO_RS03480 0.83 -1.0 758,653 + HSERO_RS03480 0.86 +0.2 758,743 - -3.0 758,859 - -2.7 759,343 - -0.5 759,482 + HSERO_RS03490 0.50 -0.6 759,615 + +0.3 759,657 + +1.0 759,710 - -0.5 759,797 + HSERO_RS03495 0.11 +0.0
Or see this region's nucleotide sequence