Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04704

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04702 and H281DRAFT_04703 are separated by 47 nucleotidesH281DRAFT_04703 and H281DRAFT_04704 are separated by 29 nucleotidesH281DRAFT_04704 and H281DRAFT_04705 overlap by 4 nucleotidesH281DRAFT_04705 and H281DRAFT_04706 are separated by 48 nucleotides H281DRAFT_04702: H281DRAFT_04702 - para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase, at 114,698 to 116,587 _04702 H281DRAFT_04703: H281DRAFT_04703 - ketopantoate hydroxymethyltransferase, at 116,635 to 117,450 _04703 H281DRAFT_04704: H281DRAFT_04704 - Deoxyadenosine/deoxycytidine kinase, at 117,480 to 118,160 _04704 H281DRAFT_04705: H281DRAFT_04705 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 118,157 to 118,690 _04705 H281DRAFT_04706: H281DRAFT_04706 - poly(A) polymerase, at 118,739 to 120,337 _04706 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2at 116.517 kb on + strandat 116.518 kb on - strandat 116.518 kb on - strandat 116.518 kb on - strandat 116.518 kb on - strandat 116.688 kb on - strandat 117.444 kb on - strandat 117.626 kb on - strand, within H281DRAFT_04704at 117.640 kb on + strandat 117.641 kb on - strand, within H281DRAFT_04704at 117.664 kb on + strand, within H281DRAFT_04704at 117.665 kb on - strand, within H281DRAFT_04704at 117.965 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.696 kb on - strandat 118.696 kb on - strandat 118.696 kb on - strandat 118.696 kb on - strandat 118.710 kb on - strandat 118.889 kb on - strandat 119.006 kb on - strand, within H281DRAFT_04706

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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116,517 + +0.0
116,518 - -0.9
116,518 - +0.9
116,518 - +1.0
116,518 - -0.7
116,688 - -0.4
117,444 - -0.4
117,626 - H281DRAFT_04704 0.21 +0.5
117,640 + -0.8
117,641 - H281DRAFT_04704 0.24 -0.1
117,664 + H281DRAFT_04704 0.27 -0.9
117,665 - H281DRAFT_04704 0.27 -2.1
117,965 - H281DRAFT_04704 0.71 -0.1
118,086 - H281DRAFT_04704 0.89 -1.3
118,086 - H281DRAFT_04704 0.89 -0.1
118,086 - H281DRAFT_04704 0.89 -0.3
118,696 - +0.3
118,696 - -0.2
118,696 - +0.6
118,696 - +1.8
118,710 - +0.4
118,889 - -1.7
119,006 - H281DRAFT_04706 0.17 -0.9

Or see this region's nucleotide sequence