Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03956

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03955 and H281DRAFT_03956 are separated by 169 nucleotidesH281DRAFT_03956 and H281DRAFT_03957 are separated by 22 nucleotides H281DRAFT_03955: H281DRAFT_03955 - transporter, CPA2 family, at 57,316 to 59,073 _03955 H281DRAFT_03956: H281DRAFT_03956 - Protein of unknown function (DUF2848), at 59,243 to 59,929 _03956 H281DRAFT_03957: H281DRAFT_03957 - D-galactonate transporter, at 59,952 to 61,301 _03957 Position (kb) 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1at 58.350 kb on - strand, within H281DRAFT_03955at 58.350 kb on - strand, within H281DRAFT_03955at 58.350 kb on - strand, within H281DRAFT_03955at 58.350 kb on - strand, within H281DRAFT_03955at 58.364 kb on - strand, within H281DRAFT_03955at 58.439 kb on + strand, within H281DRAFT_03955at 58.439 kb on + strand, within H281DRAFT_03955at 58.439 kb on + strand, within H281DRAFT_03955at 58.440 kb on - strand, within H281DRAFT_03955at 58.440 kb on - strand, within H281DRAFT_03955at 58.440 kb on - strand, within H281DRAFT_03955at 58.440 kb on - strand, within H281DRAFT_03955at 58.757 kb on + strand, within H281DRAFT_03955at 58.763 kb on - strand, within H281DRAFT_03955at 58.817 kb on - strand, within H281DRAFT_03955at 58.937 kb on + strandat 58.938 kb on - strandat 58.967 kb on + strandat 58.967 kb on + strandat 58.968 kb on - strandat 59.096 kb on - strandat 59.118 kb on - strandat 59.269 kb on - strandat 59.307 kb on + strandat 59.308 kb on - strandat 59.420 kb on + strand, within H281DRAFT_03956at 59.421 kb on - strand, within H281DRAFT_03956at 59.679 kb on - strand, within H281DRAFT_03956at 59.913 kb on + strandat 59.914 kb on - strandat 59.933 kb on - strandat 60.061 kb on - strandat 60.061 kb on - strandat 60.096 kb on + strand, within H281DRAFT_03957at 60.177 kb on + strand, within H281DRAFT_03957at 60.185 kb on - strand, within H281DRAFT_03957at 60.310 kb on - strand, within H281DRAFT_03957at 60.310 kb on - strand, within H281DRAFT_03957at 60.369 kb on + strand, within H281DRAFT_03957at 60.369 kb on + strand, within H281DRAFT_03957at 60.370 kb on - strand, within H281DRAFT_03957at 60.370 kb on - strand, within H281DRAFT_03957at 60.632 kb on - strand, within H281DRAFT_03957at 60.689 kb on + strand, within H281DRAFT_03957at 60.689 kb on + strand, within H281DRAFT_03957at 60.689 kb on + strand, within H281DRAFT_03957at 60.689 kb on + strand, within H281DRAFT_03957at 60.741 kb on + strand, within H281DRAFT_03957at 60.741 kb on + strand, within H281DRAFT_03957at 60.741 kb on + strand, within H281DRAFT_03957at 60.742 kb on - strand, within H281DRAFT_03957at 60.924 kb on + strand, within H281DRAFT_03957

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
58,350 - H281DRAFT_03955 0.59 +1.5
58,350 - H281DRAFT_03955 0.59 +0.4
58,350 - H281DRAFT_03955 0.59 +0.4
58,350 - H281DRAFT_03955 0.59 -0.1
58,364 - H281DRAFT_03955 0.60 -0.5
58,439 + H281DRAFT_03955 0.64 -0.8
58,439 + H281DRAFT_03955 0.64 +0.1
58,439 + H281DRAFT_03955 0.64 +0.1
58,440 - H281DRAFT_03955 0.64 +0.1
58,440 - H281DRAFT_03955 0.64 +0.9
58,440 - H281DRAFT_03955 0.64 -0.2
58,440 - H281DRAFT_03955 0.64 -0.3
58,757 + H281DRAFT_03955 0.82 -3.2
58,763 - H281DRAFT_03955 0.82 +0.2
58,817 - H281DRAFT_03955 0.85 -0.1
58,937 + -0.5
58,938 - +1.0
58,967 + +0.8
58,967 + -0.1
58,968 - +0.2
59,096 - -0.3
59,118 - +0.0
59,269 - +0.7
59,307 + -0.3
59,308 - -0.9
59,420 + H281DRAFT_03956 0.26 +0.4
59,421 - H281DRAFT_03956 0.26 +1.0
59,679 - H281DRAFT_03956 0.63 -0.0
59,913 + +0.7
59,914 - +0.3
59,933 - +0.3
60,061 - -0.1
60,061 - -0.8
60,096 + H281DRAFT_03957 0.11 +0.3
60,177 + H281DRAFT_03957 0.17 +1.0
60,185 - H281DRAFT_03957 0.17 -0.3
60,310 - H281DRAFT_03957 0.27 -0.9
60,310 - H281DRAFT_03957 0.27 +0.1
60,369 + H281DRAFT_03957 0.31 +0.3
60,369 + H281DRAFT_03957 0.31 +0.4
60,370 - H281DRAFT_03957 0.31 +0.6
60,370 - H281DRAFT_03957 0.31 +0.7
60,632 - H281DRAFT_03957 0.50 +0.8
60,689 + H281DRAFT_03957 0.55 -0.4
60,689 + H281DRAFT_03957 0.55 +0.1
60,689 + H281DRAFT_03957 0.55 -0.0
60,689 + H281DRAFT_03957 0.55 -0.1
60,741 + H281DRAFT_03957 0.58 -1.0
60,741 + H281DRAFT_03957 0.58 +0.1
60,741 + H281DRAFT_03957 0.58 -0.1
60,742 - H281DRAFT_03957 0.59 +0.5
60,924 + H281DRAFT_03957 0.72 +0.0

Or see this region's nucleotide sequence