Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00935

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00934 and H281DRAFT_00935 are separated by 212 nucleotidesH281DRAFT_00935 and H281DRAFT_00936 are separated by 31 nucleotides H281DRAFT_00934: H281DRAFT_00934 - Small-conductance mechanosensitive channel, at 1,036,913 to 1,038,148 _00934 H281DRAFT_00935: H281DRAFT_00935 - trehalose 6-phosphate synthase, at 1,038,361 to 1,039,773 _00935 H281DRAFT_00936: H281DRAFT_00936 - Predicted ATPase, at 1,039,805 to 1,041,037 _00936 Position (kb) 1038 1039 1040Strain fitness (log2 ratio) -2 -1 0 1at 1037.600 kb on + strand, within H281DRAFT_00934at 1037.600 kb on + strand, within H281DRAFT_00934at 1037.600 kb on + strand, within H281DRAFT_00934at 1037.601 kb on - strand, within H281DRAFT_00934at 1037.601 kb on - strand, within H281DRAFT_00934at 1037.952 kb on - strand, within H281DRAFT_00934at 1038.146 kb on + strandat 1038.241 kb on + strandat 1038.241 kb on + strandat 1038.241 kb on + strandat 1038.241 kb on + strandat 1038.241 kb on + strandat 1038.241 kb on + strandat 1038.242 kb on - strandat 1038.242 kb on - strandat 1038.242 kb on - strandat 1038.247 kb on + strandat 1038.247 kb on + strandat 1038.248 kb on - strandat 1038.248 kb on - strandat 1038.355 kb on - strandat 1038.355 kb on - strandat 1038.355 kb on - strandat 1038.595 kb on - strandat 1038.596 kb on - strand, within H281DRAFT_00935at 1038.599 kb on - strand, within H281DRAFT_00935at 1038.677 kb on - strand, within H281DRAFT_00935at 1038.763 kb on + strand, within H281DRAFT_00935at 1038.764 kb on - strand, within H281DRAFT_00935at 1038.958 kb on + strand, within H281DRAFT_00935at 1038.958 kb on + strand, within H281DRAFT_00935at 1038.959 kb on - strand, within H281DRAFT_00935at 1038.959 kb on - strand, within H281DRAFT_00935at 1039.288 kb on - strand, within H281DRAFT_00935at 1039.288 kb on - strand, within H281DRAFT_00935at 1039.291 kb on + strand, within H281DRAFT_00935at 1039.345 kb on + strand, within H281DRAFT_00935at 1039.346 kb on - strand, within H281DRAFT_00935at 1039.346 kb on - strand, within H281DRAFT_00935at 1039.360 kb on + strand, within H281DRAFT_00935at 1039.390 kb on + strand, within H281DRAFT_00935at 1039.390 kb on + strand, within H281DRAFT_00935at 1039.484 kb on - strand, within H281DRAFT_00935at 1039.771 kb on + strandat 1039.858 kb on - strandat 1040.190 kb on - strand, within H281DRAFT_00936at 1040.468 kb on + strand, within H281DRAFT_00936at 1040.468 kb on + strand, within H281DRAFT_00936at 1040.469 kb on - strand, within H281DRAFT_00936at 1040.469 kb on - strand, within H281DRAFT_00936at 1040.747 kb on + strand, within H281DRAFT_00936at 1040.748 kb on - strand, within H281DRAFT_00936at 1040.748 kb on - strand, within H281DRAFT_00936at 1040.751 kb on + strand, within H281DRAFT_00936at 1040.752 kb on - strand, within H281DRAFT_00936at 1040.752 kb on - strand, within H281DRAFT_00936at 1040.752 kb on - strand, within H281DRAFT_00936at 1040.752 kb on - strand, within H281DRAFT_00936at 1040.752 kb on - strand, within H281DRAFT_00936

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,037,600 + H281DRAFT_00934 0.56 +0.7
1,037,600 + H281DRAFT_00934 0.56 -0.2
1,037,600 + H281DRAFT_00934 0.56 -0.4
1,037,601 - H281DRAFT_00934 0.56 +0.9
1,037,601 - H281DRAFT_00934 0.56 -0.8
1,037,952 - H281DRAFT_00934 0.84 -0.6
1,038,146 + +0.1
1,038,241 + -0.2
1,038,241 + +0.2
1,038,241 + -0.2
1,038,241 + -2.1
1,038,241 + +0.4
1,038,241 + +0.7
1,038,242 - +0.1
1,038,242 - -0.2
1,038,242 - +0.5
1,038,247 + +0.6
1,038,247 + +1.0
1,038,248 - +0.3
1,038,248 - +0.6
1,038,355 - -0.8
1,038,355 - +0.2
1,038,355 - +0.3
1,038,595 - +1.3
1,038,596 - H281DRAFT_00935 0.17 +0.8
1,038,599 - H281DRAFT_00935 0.17 -0.5
1,038,677 - H281DRAFT_00935 0.22 +0.3
1,038,763 + H281DRAFT_00935 0.28 +0.2
1,038,764 - H281DRAFT_00935 0.29 +0.2
1,038,958 + H281DRAFT_00935 0.42 +0.0
1,038,958 + H281DRAFT_00935 0.42 +0.2
1,038,959 - H281DRAFT_00935 0.42 -0.1
1,038,959 - H281DRAFT_00935 0.42 +0.2
1,039,288 - H281DRAFT_00935 0.66 +0.7
1,039,288 - H281DRAFT_00935 0.66 -0.2
1,039,291 + H281DRAFT_00935 0.66 -0.4
1,039,345 + H281DRAFT_00935 0.70 -0.1
1,039,346 - H281DRAFT_00935 0.70 +0.7
1,039,346 - H281DRAFT_00935 0.70 -0.1
1,039,360 + H281DRAFT_00935 0.71 +0.1
1,039,390 + H281DRAFT_00935 0.73 +0.6
1,039,390 + H281DRAFT_00935 0.73 -1.5
1,039,484 - H281DRAFT_00935 0.79 +0.0
1,039,771 + -0.3
1,039,858 - -0.6
1,040,190 - H281DRAFT_00936 0.31 +0.4
1,040,468 + H281DRAFT_00936 0.54 -0.6
1,040,468 + H281DRAFT_00936 0.54 +0.3
1,040,469 - H281DRAFT_00936 0.54 -0.3
1,040,469 - H281DRAFT_00936 0.54 -0.3
1,040,747 + H281DRAFT_00936 0.76 +0.4
1,040,748 - H281DRAFT_00936 0.76 +0.9
1,040,748 - H281DRAFT_00936 0.76 -0.6
1,040,751 + H281DRAFT_00936 0.77 +0.5
1,040,752 - H281DRAFT_00936 0.77 +0.4
1,040,752 - H281DRAFT_00936 0.77 -0.7
1,040,752 - H281DRAFT_00936 0.77 +0.4
1,040,752 - H281DRAFT_00936 0.77 -2.3
1,040,752 - H281DRAFT_00936 0.77 -1.0

Or see this region's nucleotide sequence