Experiment: 1-ethyl-3-methylimidazolium acetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0556 and Ga0059261_0557 overlap by 4 nucleotides Ga0059261_0557 and Ga0059261_0558 are separated by 38 nucleotides Ga0059261_0558 and Ga0059261_0559 overlap by 4 nucleotides
Ga0059261_0556: Ga0059261_0556 - Signal transduction histidine kinase, at 570,585 to 571,946
_0556
Ga0059261_0557: Ga0059261_0557 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 571,943 to 572,680
_0557
Ga0059261_0558: Ga0059261_0558 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 572,719 to 574,119
_0558
Ga0059261_0559: Ga0059261_0559 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 574,116 to 577,244
_0559
Position (kb) 572
573
574
575 Strain fitness (log2 ratio) -2
-1
0
1
2 at 571.811 kb on - strand at 571.824 kb on + strand at 571.824 kb on + strand at 571.824 kb on + strand at 571.825 kb on - strand at 571.825 kb on - strand at 571.825 kb on - strand at 571.868 kb on + strand at 571.869 kb on - strand at 571.974 kb on + strand at 571.974 kb on + strand at 571.975 kb on - strand at 571.975 kb on - strand at 571.975 kb on - strand at 572.349 kb on + strand, within Ga0059261_0557 at 572.349 kb on + strand, within Ga0059261_0557 at 572.349 kb on + strand, within Ga0059261_0557 at 572.349 kb on + strand, within Ga0059261_0557 at 572.349 kb on + strand, within Ga0059261_0557 at 572.350 kb on - strand, within Ga0059261_0557 at 572.350 kb on - strand, within Ga0059261_0557 at 572.350 kb on - strand, within Ga0059261_0557 at 572.568 kb on + strand, within Ga0059261_0557 at 572.568 kb on + strand, within Ga0059261_0557 at 572.568 kb on + strand, within Ga0059261_0557 at 572.569 kb on - strand at 572.569 kb on - strand, within Ga0059261_0557 at 572.685 kb on + strand at 572.686 kb on - strand at 572.686 kb on - strand at 572.687 kb on + strand at 572.688 kb on - strand at 572.688 kb on - strand at 572.688 kb on - strand at 572.751 kb on - strand at 572.760 kb on + strand at 572.813 kb on + strand at 572.813 kb on + strand at 572.813 kb on + strand at 572.814 kb on - strand at 572.814 kb on - strand at 572.814 kb on - strand at 572.981 kb on + strand, within Ga0059261_0558 at 572.981 kb on + strand, within Ga0059261_0558 at 572.981 kb on + strand, within Ga0059261_0558 at 572.981 kb on + strand, within Ga0059261_0558 at 572.982 kb on - strand, within Ga0059261_0558 at 573.005 kb on + strand at 573.006 kb on - strand, within Ga0059261_0558 at 573.020 kb on + strand, within Ga0059261_0558 at 573.021 kb on - strand, within Ga0059261_0558 at 573.021 kb on - strand, within Ga0059261_0558 at 573.021 kb on - strand, within Ga0059261_0558 at 573.041 kb on + strand, within Ga0059261_0558 at 573.410 kb on + strand, within Ga0059261_0558 at 573.411 kb on - strand, within Ga0059261_0558 at 573.584 kb on + strand, within Ga0059261_0558 at 573.584 kb on + strand, within Ga0059261_0558 at 573.585 kb on - strand, within Ga0059261_0558 at 573.585 kb on - strand, within Ga0059261_0558 at 573.651 kb on - strand, within Ga0059261_0558 at 573.651 kb on - strand, within Ga0059261_0558 at 573.651 kb on - strand, within Ga0059261_0558 at 573.651 kb on - strand, within Ga0059261_0558 at 573.845 kb on + strand, within Ga0059261_0558 at 573.845 kb on + strand, within Ga0059261_0558 at 573.846 kb on - strand, within Ga0059261_0558 at 573.846 kb on - strand, within Ga0059261_0558 at 573.992 kb on + strand at 573.992 kb on + strand at 573.992 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.025 kb on + strand at 574.026 kb on - strand at 574.026 kb on - strand at 574.026 kb on - strand at 574.026 kb on - strand at 574.026 kb on - strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.046 kb on + strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.047 kb on - strand at 574.192 kb on + strand at 574.192 kb on + strand at 574.192 kb on + strand at 574.192 kb on + strand at 574.193 kb on - strand at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.474 kb on + strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.475 kb on - strand, within Ga0059261_0559 at 574.576 kb on + strand, within Ga0059261_0559 at 574.577 kb on - strand, within Ga0059261_0559 at 574.577 kb on - strand, within Ga0059261_0559 at 574.577 kb on - strand, within Ga0059261_0559 at 574.621 kb on + strand, within Ga0059261_0559 at 574.621 kb on + strand, within Ga0059261_0559 at 574.622 kb on - strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.681 kb on + strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.682 kb on - strand, within Ga0059261_0559 at 574.749 kb on - strand, within Ga0059261_0559 at 574.777 kb on + strand, within Ga0059261_0559 at 574.777 kb on + strand, within Ga0059261_0559 at 574.778 kb on - strand at 574.778 kb on - strand, within Ga0059261_0559 at 574.778 kb on - strand, within Ga0059261_0559 at 574.778 kb on - strand, within Ga0059261_0559 at 574.778 kb on - strand, within Ga0059261_0559 at 574.939 kb on + strand, within Ga0059261_0559 at 574.940 kb on - strand, within Ga0059261_0559 at 574.940 kb on - strand, within Ga0059261_0559 at 574.940 kb on - strand, within Ga0059261_0559 at 574.940 kb on - strand, within Ga0059261_0559 at 574.979 kb on + strand, within Ga0059261_0559 at 574.980 kb on - strand, within Ga0059261_0559 at 574.980 kb on - strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.981 kb on + strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 574.982 kb on - strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.096 kb on + strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559 at 575.097 kb on - strand, within Ga0059261_0559
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 10 mM remove 571,811 - -0.3 571,824 + +0.4 571,824 + -0.8 571,824 + +0.0 571,825 - +0.1 571,825 - -0.4 571,825 - -0.3 571,868 + -0.8 571,869 - -0.6 571,974 + +0.9 571,974 + +1.3 571,975 - -0.6 571,975 - -0.5 571,975 - -0.1 572,349 + Ga0059261_0557 0.55 -1.1 572,349 + Ga0059261_0557 0.55 -0.9 572,349 + Ga0059261_0557 0.55 +0.0 572,349 + Ga0059261_0557 0.55 -1.3 572,349 + Ga0059261_0557 0.55 +0.0 572,350 - Ga0059261_0557 0.55 +0.0 572,350 - Ga0059261_0557 0.55 +0.6 572,350 - Ga0059261_0557 0.55 -0.2 572,568 + Ga0059261_0557 0.85 -0.0 572,568 + Ga0059261_0557 0.85 -0.4 572,568 + Ga0059261_0557 0.85 -0.2 572,569 - +0.4 572,569 - Ga0059261_0557 0.85 +0.2 572,685 + +0.3 572,686 - -0.4 572,686 - -0.8 572,687 + -0.7 572,688 - -1.3 572,688 - +1.0 572,688 - -0.6 572,751 - -0.4 572,760 + -0.4 572,813 + -0.6 572,813 + +0.8 572,813 + +0.8 572,814 - -0.6 572,814 - -0.6 572,814 - +0.1 572,981 + Ga0059261_0558 0.19 +0.1 572,981 + Ga0059261_0558 0.19 +0.2 572,981 + Ga0059261_0558 0.19 +0.8 572,981 + Ga0059261_0558 0.19 +1.3 572,982 - Ga0059261_0558 0.19 -0.3 573,005 + +1.0 573,006 - Ga0059261_0558 0.20 +1.4 573,020 + Ga0059261_0558 0.21 +1.3 573,021 - Ga0059261_0558 0.22 -0.1 573,021 - Ga0059261_0558 0.22 -0.3 573,021 - Ga0059261_0558 0.22 +0.3 573,041 + Ga0059261_0558 0.23 -0.1 573,410 + Ga0059261_0558 0.49 +0.1 573,411 - Ga0059261_0558 0.49 +0.5 573,584 + Ga0059261_0558 0.62 +0.2 573,584 + Ga0059261_0558 0.62 +0.1 573,585 - Ga0059261_0558 0.62 +2.6 573,585 - Ga0059261_0558 0.62 -0.0 573,651 - Ga0059261_0558 0.67 -0.3 573,651 - Ga0059261_0558 0.67 -0.0 573,651 - Ga0059261_0558 0.67 -0.2 573,651 - Ga0059261_0558 0.67 -0.1 573,845 + Ga0059261_0558 0.80 +0.7 573,845 + Ga0059261_0558 0.80 +0.0 573,846 - Ga0059261_0558 0.80 -0.7 573,846 - Ga0059261_0558 0.80 -1.1 573,992 + +0.2 573,992 + -2.0 573,992 + -0.4 574,025 + -0.2 574,025 + -1.3 574,025 + +0.8 574,025 + -0.3 574,025 + +0.6 574,025 + -0.2 574,025 + +0.2 574,026 - -1.0 574,026 - +0.9 574,026 - +0.0 574,026 - +0.2 574,026 - -0.4 574,046 + -0.3 574,046 + -0.8 574,046 + +0.6 574,046 + +0.0 574,046 + -0.2 574,046 + -0.1 574,046 + -0.6 574,046 + +1.0 574,046 + -0.3 574,046 + +0.0 574,046 + -0.2 574,046 + -0.1 574,046 + +0.5 574,046 + -0.1 574,046 + -1.3 574,047 - -0.3 574,047 - -0.4 574,047 - +1.6 574,047 - -2.2 574,047 - +0.0 574,047 - +0.3 574,047 - +0.4 574,047 - -0.9 574,047 - -0.4 574,192 + +1.5 574,192 + -0.6 574,192 + +0.7 574,192 + -0.0 574,193 - +0.4 574,474 + Ga0059261_0559 0.11 -0.1 574,474 + Ga0059261_0559 0.11 +0.5 574,474 + Ga0059261_0559 0.11 +0.1 574,474 + Ga0059261_0559 0.11 +1.8 574,474 + Ga0059261_0559 0.11 -0.5 574,474 + Ga0059261_0559 0.11 -0.9 574,475 - Ga0059261_0559 0.11 -0.7 574,475 - Ga0059261_0559 0.11 -0.4 574,475 - Ga0059261_0559 0.11 +0.5 574,475 - Ga0059261_0559 0.11 +0.3 574,475 - Ga0059261_0559 0.11 -0.1 574,475 - Ga0059261_0559 0.11 +0.2 574,475 - Ga0059261_0559 0.11 +0.3 574,475 - Ga0059261_0559 0.11 +0.2 574,576 + Ga0059261_0559 0.15 -0.6 574,577 - Ga0059261_0559 0.15 -0.3 574,577 - Ga0059261_0559 0.15 +1.0 574,577 - Ga0059261_0559 0.15 -2.1 574,621 + Ga0059261_0559 0.16 +0.5 574,621 + Ga0059261_0559 0.16 +0.4 574,622 - Ga0059261_0559 0.16 +0.4 574,681 + Ga0059261_0559 0.18 -0.8 574,681 + Ga0059261_0559 0.18 -1.0 574,681 + Ga0059261_0559 0.18 -0.4 574,681 + +1.4 574,681 + Ga0059261_0559 0.18 +0.1 574,681 + Ga0059261_0559 0.18 +0.9 574,681 + Ga0059261_0559 0.18 -0.0 574,681 + Ga0059261_0559 0.18 -0.1 574,682 - Ga0059261_0559 0.18 -0.2 574,682 - Ga0059261_0559 0.18 -0.5 574,682 - Ga0059261_0559 0.18 -0.3 574,682 - Ga0059261_0559 0.18 -0.4 574,682 - Ga0059261_0559 0.18 +0.2 574,682 - Ga0059261_0559 0.18 +0.3 574,749 - Ga0059261_0559 0.20 -0.9 574,777 + Ga0059261_0559 0.21 +0.0 574,777 + Ga0059261_0559 0.21 -0.2 574,778 - +0.3 574,778 - Ga0059261_0559 0.21 -0.1 574,778 - Ga0059261_0559 0.21 +2.3 574,778 - Ga0059261_0559 0.21 -0.7 574,778 - Ga0059261_0559 0.21 +0.0 574,939 + Ga0059261_0559 0.26 -0.4 574,940 - Ga0059261_0559 0.26 +0.0 574,940 - Ga0059261_0559 0.26 +0.1 574,940 - Ga0059261_0559 0.26 -0.2 574,940 - Ga0059261_0559 0.26 +0.3 574,979 + Ga0059261_0559 0.28 -0.1 574,980 - Ga0059261_0559 0.28 +0.1 574,980 - Ga0059261_0559 0.28 -0.1 574,981 + Ga0059261_0559 0.28 +0.5 574,981 + Ga0059261_0559 0.28 +0.5 574,981 + Ga0059261_0559 0.28 +0.2 574,981 + Ga0059261_0559 0.28 -1.2 574,981 + Ga0059261_0559 0.28 -0.7 574,981 + Ga0059261_0559 0.28 +0.7 574,981 + Ga0059261_0559 0.28 -0.6 574,981 + Ga0059261_0559 0.28 +0.6 574,981 + Ga0059261_0559 0.28 -0.5 574,981 + Ga0059261_0559 0.28 -0.6 574,981 + Ga0059261_0559 0.28 -0.1 574,981 + Ga0059261_0559 0.28 -1.0 574,982 - Ga0059261_0559 0.28 +0.2 574,982 - Ga0059261_0559 0.28 +0.8 574,982 - Ga0059261_0559 0.28 +0.1 574,982 - Ga0059261_0559 0.28 -0.0 574,982 - Ga0059261_0559 0.28 +0.6 574,982 - Ga0059261_0559 0.28 -0.1 574,982 - Ga0059261_0559 0.28 +0.3 574,982 - Ga0059261_0559 0.28 +0.5 574,982 - Ga0059261_0559 0.28 +0.4 574,982 - Ga0059261_0559 0.28 -0.5 574,982 - Ga0059261_0559 0.28 +0.4 575,096 + Ga0059261_0559 0.31 -0.3 575,096 + Ga0059261_0559 0.31 +1.2 575,096 + Ga0059261_0559 0.31 +0.3 575,096 + Ga0059261_0559 0.31 +0.4 575,096 + Ga0059261_0559 0.31 +0.0 575,096 + Ga0059261_0559 0.31 -0.3 575,097 - Ga0059261_0559 0.31 -0.0 575,097 - Ga0059261_0559 0.31 -0.7 575,097 - Ga0059261_0559 0.31 -0.1 575,097 - Ga0059261_0559 0.31 +0.4 575,097 - Ga0059261_0559 0.31 -0.5
Or see this region's nucleotide sequence