Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03537

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03535 and CCNA_03536 are separated by 24 nucleotidesCCNA_03536 and CCNA_03537 are separated by 44 nucleotidesCCNA_03537 and CCNA_03538 are separated by 14 nucleotidesCCNA_03538 and CCNA_03539 are separated by 29 nucleotides CCNA_03535: CCNA_03535 - fatty acid desaturase, at 3,694,097 to 3,695,053 _03535 CCNA_03536: CCNA_03536 - ribosomal protein L11 methyltransferase, at 3,695,078 to 3,695,737 _03536 CCNA_03537: CCNA_03537 - SOS-regulated glyoxalase family protein, at 3,695,782 to 3,696,135 _03537 CCNA_03538: CCNA_03538 - NADH-ubiquinone oxidoreductase, at 3,696,150 to 3,697,019 _03538 CCNA_03539: CCNA_03539 - hypothetical protein, at 3,697,049 to 3,697,411 _03539 Position (kb) 3695 3696 3697Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3694.804 kb on + strand, within CCNA_03535at 3694.815 kb on + strand, within CCNA_03535at 3694.823 kb on - strand, within CCNA_03535at 3694.825 kb on + strand, within CCNA_03535at 3694.877 kb on + strand, within CCNA_03535at 3694.882 kb on + strand, within CCNA_03535at 3694.984 kb on + strandat 3694.995 kb on - strandat 3695.007 kb on + strandat 3695.007 kb on + strandat 3695.048 kb on + strandat 3695.091 kb on + strandat 3695.108 kb on + strandat 3695.108 kb on + strandat 3695.124 kb on + strandat 3695.134 kb on - strandat 3695.139 kb on - strandat 3695.151 kb on + strand, within CCNA_03536at 3695.151 kb on + strand, within CCNA_03536at 3695.151 kb on + strand, within CCNA_03536at 3695.159 kb on - strand, within CCNA_03536at 3695.242 kb on - strand, within CCNA_03536at 3695.250 kb on - strand, within CCNA_03536at 3695.250 kb on - strand, within CCNA_03536at 3695.267 kb on + strand, within CCNA_03536at 3695.273 kb on + strand, within CCNA_03536at 3695.297 kb on - strand, within CCNA_03536at 3695.321 kb on + strand, within CCNA_03536at 3695.332 kb on - strand, within CCNA_03536at 3695.348 kb on + strand, within CCNA_03536at 3695.368 kb on + strand, within CCNA_03536at 3695.388 kb on - strand, within CCNA_03536at 3695.403 kb on - strand, within CCNA_03536at 3695.408 kb on + strand, within CCNA_03536at 3695.413 kb on + strand, within CCNA_03536at 3695.441 kb on + strand, within CCNA_03536at 3695.446 kb on + strand, within CCNA_03536at 3695.454 kb on - strand, within CCNA_03536at 3695.454 kb on - strand, within CCNA_03536at 3695.515 kb on - strand, within CCNA_03536at 3695.525 kb on + strand, within CCNA_03536at 3695.601 kb on - strand, within CCNA_03536at 3695.601 kb on - strand, within CCNA_03536at 3695.611 kb on - strand, within CCNA_03536at 3695.611 kb on - strand, within CCNA_03536at 3695.665 kb on + strand, within CCNA_03536at 3695.679 kb on - strandat 3695.698 kb on - strandat 3695.727 kb on - strandat 3695.815 kb on - strandat 3695.838 kb on + strand, within CCNA_03537at 3695.855 kb on - strand, within CCNA_03537at 3695.860 kb on + strand, within CCNA_03537at 3695.887 kb on + strand, within CCNA_03537at 3695.895 kb on + strand, within CCNA_03537at 3695.951 kb on + strand, within CCNA_03537at 3695.951 kb on + strand, within CCNA_03537at 3695.984 kb on + strand, within CCNA_03537at 3696.046 kb on + strand, within CCNA_03537at 3696.046 kb on + strand, within CCNA_03537at 3696.073 kb on - strand, within CCNA_03537at 3696.088 kb on - strand, within CCNA_03537at 3696.098 kb on - strand, within CCNA_03537at 3696.133 kb on - strandat 3696.178 kb on - strandat 3696.233 kb on - strandat 3696.238 kb on - strand, within CCNA_03538at 3696.279 kb on - strand, within CCNA_03538at 3696.279 kb on - strand, within CCNA_03538at 3696.279 kb on - strand, within CCNA_03538at 3696.279 kb on - strand, within CCNA_03538at 3696.293 kb on - strand, within CCNA_03538at 3696.302 kb on - strand, within CCNA_03538at 3696.340 kb on + strand, within CCNA_03538at 3696.348 kb on - strand, within CCNA_03538at 3696.370 kb on + strand, within CCNA_03538at 3696.400 kb on + strand, within CCNA_03538at 3696.408 kb on + strand, within CCNA_03538at 3696.408 kb on + strand, within CCNA_03538at 3696.408 kb on + strand, within CCNA_03538at 3696.408 kb on + strand, within CCNA_03538at 3696.408 kb on + strand, within CCNA_03538at 3696.408 kb on + strand, within CCNA_03538at 3696.408 kb on + strand, within CCNA_03538at 3696.408 kb on + strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.416 kb on - strand, within CCNA_03538at 3696.422 kb on - strand, within CCNA_03538at 3696.474 kb on + strand, within CCNA_03538at 3696.489 kb on + strand, within CCNA_03538at 3696.516 kb on - strand, within CCNA_03538at 3696.524 kb on + strand, within CCNA_03538at 3696.593 kb on - strand, within CCNA_03538at 3696.602 kb on + strand, within CCNA_03538at 3696.607 kb on + strand, within CCNA_03538at 3696.636 kb on + strand, within CCNA_03538at 3696.644 kb on - strand, within CCNA_03538at 3696.663 kb on - strand, within CCNA_03538at 3696.668 kb on - strand, within CCNA_03538at 3696.761 kb on + strand, within CCNA_03538at 3696.785 kb on + strand, within CCNA_03538at 3696.932 kb on - strand, within CCNA_03538at 3696.939 kb on - strandat 3696.959 kb on + strandat 3696.973 kb on - strandat 3696.999 kb on - strandat 3697.003 kb on - strandat 3697.027 kb on + strandat 3697.027 kb on + strandat 3697.027 kb on + strandat 3697.027 kb on + strandat 3697.027 kb on + strandat 3697.027 kb on + strandat 3697.027 kb on + strandat 3697.027 kb on + strandat 3697.027 kb on + strandat 3697.035 kb on - strandat 3697.035 kb on - strandat 3697.035 kb on - strandat 3697.035 kb on - strandat 3697.052 kb on + strandat 3697.123 kb on - strand, within CCNA_03539

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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3,694,804 + CCNA_03535 0.74 -0.3
3,694,815 + CCNA_03535 0.75 -1.9
3,694,823 - CCNA_03535 0.76 -0.0
3,694,825 + CCNA_03535 0.76 +0.4
3,694,877 + CCNA_03535 0.82 -0.9
3,694,882 + CCNA_03535 0.82 -0.7
3,694,984 + -0.6
3,694,995 - -1.9
3,695,007 + -2.5
3,695,007 + -2.2
3,695,048 + -1.0
3,695,091 + +1.0
3,695,108 + -0.5
3,695,108 + -0.5
3,695,124 + +0.5
3,695,134 - -1.0
3,695,139 - -1.6
3,695,151 + CCNA_03536 0.11 -1.1
3,695,151 + CCNA_03536 0.11 -0.6
3,695,151 + CCNA_03536 0.11 +0.4
3,695,159 - CCNA_03536 0.12 -1.0
3,695,242 - CCNA_03536 0.25 -1.0
3,695,250 - CCNA_03536 0.26 -0.8
3,695,250 - CCNA_03536 0.26 -2.1
3,695,267 + CCNA_03536 0.29 -1.5
3,695,273 + CCNA_03536 0.30 -0.3
3,695,297 - CCNA_03536 0.33 -1.1
3,695,321 + CCNA_03536 0.37 -1.3
3,695,332 - CCNA_03536 0.38 +1.3
3,695,348 + CCNA_03536 0.41 +0.3
3,695,368 + CCNA_03536 0.44 +0.5
3,695,388 - CCNA_03536 0.47 -0.4
3,695,403 - CCNA_03536 0.49 -0.7
3,695,408 + CCNA_03536 0.50 -0.3
3,695,413 + CCNA_03536 0.51 +1.7
3,695,441 + CCNA_03536 0.55 +2.1
3,695,446 + CCNA_03536 0.56 -0.7
3,695,454 - CCNA_03536 0.57 -3.6
3,695,454 - CCNA_03536 0.57 +0.1
3,695,515 - CCNA_03536 0.66 -0.5
3,695,525 + CCNA_03536 0.68 -1.6
3,695,601 - CCNA_03536 0.79 -1.3
3,695,601 - CCNA_03536 0.79 -0.5
3,695,611 - CCNA_03536 0.81 +0.4
3,695,611 - CCNA_03536 0.81 -1.6
3,695,665 + CCNA_03536 0.89 -0.5
3,695,679 - -2.1
3,695,698 - -2.2
3,695,727 - -1.7
3,695,815 - -0.4
3,695,838 + CCNA_03537 0.16 -1.1
3,695,855 - CCNA_03537 0.21 -1.4
3,695,860 + CCNA_03537 0.22 -1.6
3,695,887 + CCNA_03537 0.30 -2.7
3,695,895 + CCNA_03537 0.32 -2.7
3,695,951 + CCNA_03537 0.48 +0.3
3,695,951 + CCNA_03537 0.48 -1.2
3,695,984 + CCNA_03537 0.57 -0.3
3,696,046 + CCNA_03537 0.75 -0.9
3,696,046 + CCNA_03537 0.75 -1.3
3,696,073 - CCNA_03537 0.82 +0.1
3,696,088 - CCNA_03537 0.86 -0.3
3,696,098 - CCNA_03537 0.89 -0.7
3,696,133 - -1.1
3,696,178 - -1.4
3,696,233 - -1.8
3,696,238 - CCNA_03538 0.10 -2.2
3,696,279 - CCNA_03538 0.15 +0.7
3,696,279 - CCNA_03538 0.15 +0.7
3,696,279 - CCNA_03538 0.15 -0.2
3,696,279 - CCNA_03538 0.15 +1.0
3,696,293 - CCNA_03538 0.16 -0.3
3,696,302 - CCNA_03538 0.17 -1.1
3,696,340 + CCNA_03538 0.22 +1.0
3,696,348 - CCNA_03538 0.23 -0.5
3,696,370 + CCNA_03538 0.25 -0.3
3,696,400 + CCNA_03538 0.29 -0.4
3,696,408 + CCNA_03538 0.30 -0.7
3,696,408 + CCNA_03538 0.30 -1.7
3,696,408 + CCNA_03538 0.30 -2.0
3,696,408 + CCNA_03538 0.30 -0.7
3,696,408 + CCNA_03538 0.30 +1.6
3,696,408 + CCNA_03538 0.30 +0.4
3,696,408 + CCNA_03538 0.30 -0.3
3,696,408 + CCNA_03538 0.30 -1.9
3,696,416 - CCNA_03538 0.31 -0.7
3,696,416 - CCNA_03538 0.31 -1.2
3,696,416 - CCNA_03538 0.31 -0.1
3,696,416 - CCNA_03538 0.31 +0.3
3,696,416 - CCNA_03538 0.31 -1.0
3,696,416 - CCNA_03538 0.31 +1.3
3,696,416 - CCNA_03538 0.31 -0.5
3,696,416 - CCNA_03538 0.31 -1.6
3,696,416 - CCNA_03538 0.31 +0.8
3,696,416 - CCNA_03538 0.31 +0.9
3,696,422 - CCNA_03538 0.31 -0.8
3,696,474 + CCNA_03538 0.37 -0.9
3,696,489 + CCNA_03538 0.39 -0.9
3,696,516 - CCNA_03538 0.42 +0.7
3,696,524 + CCNA_03538 0.43 +0.9
3,696,593 - CCNA_03538 0.51 -1.8
3,696,602 + CCNA_03538 0.52 -0.3
3,696,607 + CCNA_03538 0.53 -0.3
3,696,636 + CCNA_03538 0.56 +1.1
3,696,644 - CCNA_03538 0.57 +2.3
3,696,663 - CCNA_03538 0.59 +0.4
3,696,668 - CCNA_03538 0.60 -0.1
3,696,761 + CCNA_03538 0.70 -0.8
3,696,785 + CCNA_03538 0.73 -0.0
3,696,932 - CCNA_03538 0.90 +0.9
3,696,939 - +2.0
3,696,959 + +0.7
3,696,973 - +0.1
3,696,999 - -0.0
3,697,003 - -0.2
3,697,027 + -0.9
3,697,027 + +0.7
3,697,027 + -0.8
3,697,027 + +0.1
3,697,027 + +1.4
3,697,027 + -2.5
3,697,027 + -0.5
3,697,027 + -1.8
3,697,027 + -0.7
3,697,035 - +0.8
3,697,035 - -0.4
3,697,035 - +0.4
3,697,035 - +0.8
3,697,052 + +0.5
3,697,123 - CCNA_03539 0.20 -0.5

Or see this region's nucleotide sequence