Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02388

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02387 and CCNA_02388 are separated by 42 nucleotidesCCNA_02388 and CCNA_02389 overlap by 4 nucleotides CCNA_02387: CCNA_02387 - glutathione reductase, at 2,530,722 to 2,532,122 _02387 CCNA_02388: CCNA_02388 - ribose 5-phosphate isomerase, at 2,532,165 to 2,532,848 _02388 CCNA_02389: CCNA_02389 - glucosamine-1-phosphate acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase, at 2,532,845 to 2,534,233 _02389 Position (kb) 2532 2533Strain fitness (log2 ratio) -2 -1 0 1 2at 2531.203 kb on + strand, within CCNA_02387at 2531.211 kb on - strand, within CCNA_02387at 2531.211 kb on - strand, within CCNA_02387at 2531.226 kb on - strand, within CCNA_02387at 2531.254 kb on + strandat 2531.262 kb on - strand, within CCNA_02387at 2531.275 kb on - strand, within CCNA_02387at 2531.288 kb on + strand, within CCNA_02387at 2531.357 kb on - strand, within CCNA_02387at 2531.359 kb on + strand, within CCNA_02387at 2531.411 kb on - strand, within CCNA_02387at 2531.418 kb on + strand, within CCNA_02387at 2531.418 kb on + strand, within CCNA_02387at 2531.426 kb on - strand, within CCNA_02387at 2531.426 kb on - strand, within CCNA_02387at 2531.426 kb on - strand, within CCNA_02387at 2531.426 kb on - strand, within CCNA_02387at 2531.429 kb on + strand, within CCNA_02387at 2531.437 kb on - strand, within CCNA_02387at 2531.437 kb on - strand, within CCNA_02387at 2531.523 kb on + strand, within CCNA_02387at 2531.550 kb on - strand, within CCNA_02387at 2531.550 kb on - strand, within CCNA_02387at 2531.576 kb on - strand, within CCNA_02387at 2531.596 kb on + strand, within CCNA_02387at 2531.604 kb on - strand, within CCNA_02387at 2531.604 kb on - strand, within CCNA_02387at 2531.604 kb on - strand, within CCNA_02387at 2531.604 kb on - strand, within CCNA_02387at 2531.604 kb on - strandat 2531.607 kb on + strand, within CCNA_02387at 2531.645 kb on + strand, within CCNA_02387at 2531.706 kb on + strand, within CCNA_02387at 2531.708 kb on + strand, within CCNA_02387at 2531.710 kb on + strand, within CCNA_02387at 2531.710 kb on + strand, within CCNA_02387at 2531.718 kb on - strand, within CCNA_02387at 2531.750 kb on - strand, within CCNA_02387at 2531.758 kb on - strand, within CCNA_02387at 2531.758 kb on - strand, within CCNA_02387at 2531.766 kb on - strand, within CCNA_02387at 2531.790 kb on + strand, within CCNA_02387at 2531.910 kb on + strand, within CCNA_02387at 2531.916 kb on + strand, within CCNA_02387at 2531.918 kb on - strand, within CCNA_02387at 2531.918 kb on - strand, within CCNA_02387at 2531.918 kb on - strand, within CCNA_02387at 2531.919 kb on - strand, within CCNA_02387at 2531.924 kb on - strand, within CCNA_02387at 2531.934 kb on - strand, within CCNA_02387at 2531.934 kb on - strand, within CCNA_02387at 2531.952 kb on + strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.960 kb on - strand, within CCNA_02387at 2531.990 kb on - strandat 2532.007 kb on + strandat 2532.083 kb on - strandat 2532.106 kb on + strandat 2532.109 kb on - strandat 2532.122 kb on + strandat 2532.158 kb on - strandat 2532.171 kb on - strandat 2532.171 kb on - strandat 2532.171 kb on - strandat 2532.191 kb on + strandat 2532.860 kb on - strandat 2532.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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2,531,203 + CCNA_02387 0.34 +0.5
2,531,211 - CCNA_02387 0.35 -0.2
2,531,211 - CCNA_02387 0.35 +0.7
2,531,226 - CCNA_02387 0.36 -0.7
2,531,254 + +2.7
2,531,262 - CCNA_02387 0.39 +0.9
2,531,275 - CCNA_02387 0.39 +1.0
2,531,288 + CCNA_02387 0.40 -0.4
2,531,357 - CCNA_02387 0.45 +0.8
2,531,359 + CCNA_02387 0.45 +1.1
2,531,411 - CCNA_02387 0.49 +0.9
2,531,418 + CCNA_02387 0.50 -2.6
2,531,418 + CCNA_02387 0.50 -0.3
2,531,426 - CCNA_02387 0.50 +0.1
2,531,426 - CCNA_02387 0.50 +0.2
2,531,426 - CCNA_02387 0.50 +0.7
2,531,426 - CCNA_02387 0.50 +0.2
2,531,429 + CCNA_02387 0.50 -0.9
2,531,437 - CCNA_02387 0.51 -0.4
2,531,437 - CCNA_02387 0.51 +0.1
2,531,523 + CCNA_02387 0.57 +0.1
2,531,550 - CCNA_02387 0.59 -1.0
2,531,550 - CCNA_02387 0.59 -1.5
2,531,576 - CCNA_02387 0.61 +0.3
2,531,596 + CCNA_02387 0.62 +0.3
2,531,604 - CCNA_02387 0.63 -1.7
2,531,604 - CCNA_02387 0.63 +0.7
2,531,604 - CCNA_02387 0.63 -0.3
2,531,604 - CCNA_02387 0.63 -0.2
2,531,604 - +2.1
2,531,607 + CCNA_02387 0.63 +0.9
2,531,645 + CCNA_02387 0.66 +1.3
2,531,706 + CCNA_02387 0.70 -1.3
2,531,708 + CCNA_02387 0.70 +0.2
2,531,710 + CCNA_02387 0.71 +1.7
2,531,710 + CCNA_02387 0.71 -0.4
2,531,718 - CCNA_02387 0.71 +0.2
2,531,750 - CCNA_02387 0.73 +0.0
2,531,758 - CCNA_02387 0.74 +0.2
2,531,758 - CCNA_02387 0.74 +0.3
2,531,766 - CCNA_02387 0.75 +0.8
2,531,790 + CCNA_02387 0.76 +0.6
2,531,910 + CCNA_02387 0.85 -0.0
2,531,916 + CCNA_02387 0.85 -0.8
2,531,918 - CCNA_02387 0.85 -0.3
2,531,918 - CCNA_02387 0.85 +0.4
2,531,918 - CCNA_02387 0.85 +1.1
2,531,919 - CCNA_02387 0.85 -0.4
2,531,924 - CCNA_02387 0.86 +0.4
2,531,934 - CCNA_02387 0.87 +0.6
2,531,934 - CCNA_02387 0.87 +0.5
2,531,952 + CCNA_02387 0.88 -2.3
2,531,960 - CCNA_02387 0.88 +0.5
2,531,960 - CCNA_02387 0.88 +1.2
2,531,960 - CCNA_02387 0.88 +0.3
2,531,960 - CCNA_02387 0.88 -0.3
2,531,960 - CCNA_02387 0.88 +0.5
2,531,990 - +0.1
2,532,007 + -2.0
2,532,083 - +1.4
2,532,106 + -1.7
2,532,109 - -0.4
2,532,122 + -0.4
2,532,158 - +1.6
2,532,171 - +1.2
2,532,171 - +0.8
2,532,171 - +1.1
2,532,191 + -0.3
2,532,860 - +0.2
2,532,885 - +2.1

Or see this region's nucleotide sequence