Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00854

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00852 and CCNA_00853 overlap by 4 nucleotidesCCNA_00853 and CCNA_00854 are separated by 129 nucleotidesCCNA_00854 and CCNA_00855 overlap by 4 nucleotidesCCNA_00855 and CCNA_00856 are separated by 140 nucleotides CCNA_00852: CCNA_00852 - TetR family transcriptional regulator, at 927,638 to 928,252 _00852 CCNA_00853: CCNA_00853 - 3-isopropylmalate dehydrogenase, at 928,249 to 929,016 _00853 CCNA_00854: CCNA_00854 - metallo-beta-lactamase protein, at 929,146 to 930,738 _00854 CCNA_00855: CCNA_00855 - rhamnogalacturonan acetylesterase, at 930,735 to 931,592 _00855 CCNA_00856: CCNA_00856 - beta-xylosidase, at 931,733 to 933,355 _00856 Position (kb) 929 930 931Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 928.176 kb on + strand, within CCNA_00852at 928.176 kb on + strand, within CCNA_00852at 928.241 kb on + strandat 928.246 kb on + strandat 928.254 kb on - strandat 928.256 kb on + strandat 928.256 kb on + strandat 928.256 kb on + strandat 928.266 kb on + strandat 928.266 kb on + strandat 928.274 kb on - strandat 928.287 kb on - strandat 928.299 kb on - strandat 928.299 kb on - strandat 928.337 kb on - strand, within CCNA_00853at 928.412 kb on - strand, within CCNA_00853at 928.460 kb on - strand, within CCNA_00853at 928.460 kb on - strand, within CCNA_00853at 928.461 kb on - strand, within CCNA_00853at 928.468 kb on - strand, within CCNA_00853at 928.470 kb on + strand, within CCNA_00853at 928.507 kb on - strand, within CCNA_00853at 928.525 kb on + strand, within CCNA_00853at 928.535 kb on + strand, within CCNA_00853at 928.572 kb on + strand, within CCNA_00853at 928.580 kb on - strand, within CCNA_00853at 928.622 kb on - strand, within CCNA_00853at 928.670 kb on + strand, within CCNA_00853at 928.688 kb on - strand, within CCNA_00853at 928.699 kb on + strand, within CCNA_00853at 928.719 kb on + strand, within CCNA_00853at 928.785 kb on + strand, within CCNA_00853at 928.795 kb on - strand, within CCNA_00853at 928.799 kb on - strand, within CCNA_00853at 928.824 kb on - strand, within CCNA_00853at 928.837 kb on + strand, within CCNA_00853at 928.860 kb on - strand, within CCNA_00853at 928.863 kb on + strand, within CCNA_00853at 928.897 kb on - strand, within CCNA_00853at 928.900 kb on + strand, within CCNA_00853at 928.996 kb on + strandat 928.996 kb on + strandat 929.002 kb on - strandat 929.002 kb on - strandat 929.041 kb on - strandat 929.070 kb on + strandat 929.076 kb on + strandat 929.076 kb on + strandat 929.076 kb on + strandat 929.076 kb on + strandat 929.078 kb on - strandat 929.078 kb on - strandat 929.084 kb on - strandat 929.102 kb on + strandat 929.107 kb on + strandat 929.128 kb on - strandat 929.196 kb on - strandat 929.217 kb on + strandat 929.217 kb on + strandat 929.222 kb on + strandat 929.225 kb on - strandat 929.230 kb on - strandat 929.300 kb on + strandat 929.300 kb on + strandat 929.308 kb on - strand, within CCNA_00854at 929.310 kb on + strand, within CCNA_00854at 929.310 kb on + strand, within CCNA_00854at 929.310 kb on + strand, within CCNA_00854at 929.310 kb on + strand, within CCNA_00854at 929.318 kb on - strand, within CCNA_00854at 929.318 kb on - strand, within CCNA_00854at 929.318 kb on - strand, within CCNA_00854at 929.320 kb on + strand, within CCNA_00854at 929.323 kb on + strand, within CCNA_00854at 929.331 kb on - strand, within CCNA_00854at 929.334 kb on + strand, within CCNA_00854at 929.342 kb on - strand, within CCNA_00854at 929.388 kb on - strand, within CCNA_00854at 929.414 kb on + strand, within CCNA_00854at 929.422 kb on - strand, within CCNA_00854at 929.453 kb on + strand, within CCNA_00854at 929.453 kb on - strand, within CCNA_00854at 929.476 kb on + strand, within CCNA_00854at 929.486 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.527 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.543 kb on - strand, within CCNA_00854at 929.550 kb on - strand, within CCNA_00854at 929.570 kb on + strand, within CCNA_00854at 929.570 kb on + strand, within CCNA_00854at 929.571 kb on + strand, within CCNA_00854at 929.599 kb on + strand, within CCNA_00854at 929.607 kb on - strand, within CCNA_00854at 929.607 kb on - strand, within CCNA_00854at 929.633 kb on + strand, within CCNA_00854at 929.637 kb on - strand, within CCNA_00854at 929.641 kb on - strand, within CCNA_00854at 929.641 kb on - strand, within CCNA_00854at 929.679 kb on - strand, within CCNA_00854at 929.685 kb on + strand, within CCNA_00854at 929.685 kb on + strand, within CCNA_00854at 929.694 kb on + strand, within CCNA_00854at 929.703 kb on - strand, within CCNA_00854at 929.711 kb on + strand, within CCNA_00854at 929.711 kb on + strand, within CCNA_00854at 929.744 kb on + strand, within CCNA_00854at 929.752 kb on - strand, within CCNA_00854at 929.844 kb on + strand, within CCNA_00854at 929.861 kb on - strand, within CCNA_00854at 929.915 kb on + strand, within CCNA_00854at 929.915 kb on + strand, within CCNA_00854at 929.945 kb on + strand, within CCNA_00854at 929.945 kb on - strand, within CCNA_00854at 930.017 kb on - strand, within CCNA_00854at 930.049 kb on - strand, within CCNA_00854at 930.068 kb on - strand, within CCNA_00854at 930.076 kb on - strand, within CCNA_00854at 930.093 kb on + strand, within CCNA_00854at 930.122 kb on + strand, within CCNA_00854at 930.132 kb on + strand, within CCNA_00854at 930.140 kb on - strand, within CCNA_00854at 930.140 kb on - strand, within CCNA_00854at 930.179 kb on + strand, within CCNA_00854at 930.189 kb on + strand, within CCNA_00854at 930.206 kb on + strand, within CCNA_00854at 930.232 kb on + strand, within CCNA_00854at 930.232 kb on + strand, within CCNA_00854at 930.232 kb on + strand, within CCNA_00854at 930.240 kb on - strand, within CCNA_00854at 930.245 kb on - strand, within CCNA_00854at 930.265 kb on - strand, within CCNA_00854at 930.270 kb on - strand, within CCNA_00854at 930.286 kb on - strand, within CCNA_00854at 930.293 kb on + strand, within CCNA_00854at 930.316 kb on - strand, within CCNA_00854at 930.317 kb on + strand, within CCNA_00854at 930.321 kb on - strand, within CCNA_00854at 930.392 kb on + strand, within CCNA_00854at 930.489 kb on + strand, within CCNA_00854at 930.489 kb on + strand, within CCNA_00854at 930.489 kb on + strand, within CCNA_00854at 930.522 kb on + strand, within CCNA_00854at 930.615 kb on - strandat 930.625 kb on - strandat 930.645 kb on + strandat 930.652 kb on + strandat 930.659 kb on - strandat 930.671 kb on + strandat 930.673 kb on + strandat 930.681 kb on - strandat 930.699 kb on + strandat 930.702 kb on - strandat 930.702 kb on - strandat 930.727 kb on - strandat 930.741 kb on - strandat 930.741 kb on - strandat 930.782 kb on - strandat 930.796 kb on + strandat 930.801 kb on + strandat 930.804 kb on - strandat 930.820 kb on + strandat 930.835 kb on - strand, within CCNA_00855at 930.845 kb on - strand, within CCNA_00855at 930.845 kb on - strand, within CCNA_00855at 930.848 kb on + strand, within CCNA_00855at 930.900 kb on + strand, within CCNA_00855at 930.900 kb on + strand, within CCNA_00855at 930.900 kb on + strand, within CCNA_00855at 930.900 kb on + strand, within CCNA_00855at 930.908 kb on - strand, within CCNA_00855at 930.918 kb on + strand, within CCNA_00855at 930.918 kb on + strand, within CCNA_00855at 930.923 kb on + strand, within CCNA_00855at 931.027 kb on + strand, within CCNA_00855at 931.032 kb on + strand, within CCNA_00855at 931.040 kb on - strand, within CCNA_00855at 931.045 kb on + strand, within CCNA_00855at 931.050 kb on + strand, within CCNA_00855at 931.070 kb on + strand, within CCNA_00855at 931.078 kb on + strand, within CCNA_00855at 931.078 kb on + strand, within CCNA_00855at 931.086 kb on - strand, within CCNA_00855at 931.110 kb on - strand, within CCNA_00855at 931.129 kb on - strand, within CCNA_00855at 931.139 kb on - strand, within CCNA_00855at 931.139 kb on - strand, within CCNA_00855at 931.140 kb on - strand, within CCNA_00855at 931.147 kb on + strand, within CCNA_00855at 931.155 kb on - strand, within CCNA_00855at 931.155 kb on - strand, within CCNA_00855at 931.155 kb on - strand, within CCNA_00855at 931.174 kb on + strand, within CCNA_00855at 931.194 kb on - strand, within CCNA_00855at 931.194 kb on - strand, within CCNA_00855at 931.206 kb on + strand, within CCNA_00855at 931.219 kb on - strand, within CCNA_00855at 931.221 kb on + strand, within CCNA_00855at 931.237 kb on - strand, within CCNA_00855at 931.297 kb on + strand, within CCNA_00855at 931.305 kb on - strand, within CCNA_00855at 931.319 kb on + strand, within CCNA_00855at 931.322 kb on - strand, within CCNA_00855at 931.333 kb on + strand, within CCNA_00855at 931.341 kb on - strand, within CCNA_00855at 931.358 kb on + strand, within CCNA_00855at 931.433 kb on - strand, within CCNA_00855at 931.444 kb on + strand, within CCNA_00855at 931.444 kb on + strand, within CCNA_00855at 931.452 kb on - strand, within CCNA_00855at 931.470 kb on + strand, within CCNA_00855at 931.470 kb on + strand, within CCNA_00855at 931.478 kb on - strand, within CCNA_00855at 931.478 kb on - strand, within CCNA_00855at 931.478 kb on - strand, within CCNA_00855at 931.512 kb on - strandat 931.534 kb on - strandat 931.540 kb on + strandat 931.570 kb on - strandat 931.592 kb on + strandat 931.600 kb on - strandat 931.608 kb on + strandat 931.613 kb on - strandat 931.639 kb on + strandat 931.639 kb on + strandat 931.652 kb on - strandat 931.652 kb on - strandat 931.681 kb on - strandat 931.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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928,176 + CCNA_00852 0.87 -0.9
928,176 + CCNA_00852 0.87 -0.3
928,241 + -2.4
928,246 + +0.2
928,254 - -0.5
928,256 + +1.0
928,256 + +0.6
928,256 + +0.2
928,266 + -0.4
928,266 + +0.2
928,274 - -0.2
928,287 - +0.3
928,299 - -0.6
928,299 - +1.6
928,337 - CCNA_00853 0.11 +0.2
928,412 - CCNA_00853 0.21 +0.5
928,460 - CCNA_00853 0.27 +0.0
928,460 - CCNA_00853 0.27 -1.3
928,461 - CCNA_00853 0.28 -1.1
928,468 - CCNA_00853 0.29 -1.6
928,470 + CCNA_00853 0.29 -3.0
928,507 - CCNA_00853 0.34 -0.4
928,525 + CCNA_00853 0.36 +0.1
928,535 + CCNA_00853 0.37 -0.2
928,572 + CCNA_00853 0.42 +2.9
928,580 - CCNA_00853 0.43 -1.3
928,622 - CCNA_00853 0.49 -1.8
928,670 + CCNA_00853 0.55 +0.5
928,688 - CCNA_00853 0.57 -0.6
928,699 + CCNA_00853 0.59 -0.9
928,719 + CCNA_00853 0.61 -0.1
928,785 + CCNA_00853 0.70 -2.8
928,795 - CCNA_00853 0.71 -0.5
928,799 - CCNA_00853 0.72 -0.9
928,824 - CCNA_00853 0.75 +1.1
928,837 + CCNA_00853 0.77 -2.1
928,860 - CCNA_00853 0.80 +0.9
928,863 + CCNA_00853 0.80 -1.3
928,897 - CCNA_00853 0.84 +0.4
928,900 + CCNA_00853 0.85 +1.2
928,996 + -0.1
928,996 + -1.6
929,002 - -0.2
929,002 - +1.4
929,041 - -1.3
929,070 + +1.2
929,076 + +1.3
929,076 + +1.9
929,076 + +1.5
929,076 + +1.2
929,078 - +1.9
929,078 - -0.5
929,084 - -1.3
929,102 + -0.3
929,107 + -2.2
929,128 - -1.2
929,196 - +0.2
929,217 + -1.0
929,217 + +0.8
929,222 + -0.4
929,225 - -0.7
929,230 - -2.5
929,300 + +0.5
929,300 + -0.8
929,308 - CCNA_00854 0.10 -1.7
929,310 + CCNA_00854 0.10 -0.3
929,310 + CCNA_00854 0.10 +0.1
929,310 + CCNA_00854 0.10 -0.6
929,310 + CCNA_00854 0.10 -0.3
929,318 - CCNA_00854 0.11 -0.1
929,318 - CCNA_00854 0.11 -0.2
929,318 - CCNA_00854 0.11 -1.9
929,320 + CCNA_00854 0.11 +0.1
929,323 + CCNA_00854 0.11 +1.0
929,331 - CCNA_00854 0.12 +0.7
929,334 + CCNA_00854 0.12 +1.2
929,342 - CCNA_00854 0.12 -0.5
929,388 - CCNA_00854 0.15 -0.9
929,414 + CCNA_00854 0.17 -1.4
929,422 - CCNA_00854 0.17 +0.4
929,453 + CCNA_00854 0.19 -0.5
929,453 - CCNA_00854 0.19 -0.1
929,476 + CCNA_00854 0.21 -0.6
929,486 + CCNA_00854 0.21 -1.3
929,523 + CCNA_00854 0.24 +0.4
929,523 + CCNA_00854 0.24 -2.5
929,523 + CCNA_00854 0.24 -0.8
929,523 + CCNA_00854 0.24 -1.7
929,523 + CCNA_00854 0.24 -1.3
929,523 + CCNA_00854 0.24 +0.9
929,523 + CCNA_00854 0.24 -1.9
929,527 - CCNA_00854 0.24 +0.9
929,531 - CCNA_00854 0.24 -1.1
929,531 - CCNA_00854 0.24 -1.3
929,531 - CCNA_00854 0.24 -1.3
929,531 - CCNA_00854 0.24 +0.9
929,531 - CCNA_00854 0.24 -2.6
929,543 - CCNA_00854 0.25 -2.8
929,550 - CCNA_00854 0.25 -1.6
929,570 + CCNA_00854 0.27 -1.8
929,570 + CCNA_00854 0.27 -0.8
929,571 + CCNA_00854 0.27 +1.6
929,599 + CCNA_00854 0.28 -1.2
929,607 - CCNA_00854 0.29 -1.4
929,607 - CCNA_00854 0.29 -1.5
929,633 + CCNA_00854 0.31 -2.7
929,637 - CCNA_00854 0.31 -1.8
929,641 - CCNA_00854 0.31 -0.7
929,641 - CCNA_00854 0.31 -3.1
929,679 - CCNA_00854 0.33 -0.6
929,685 + CCNA_00854 0.34 +0.6
929,685 + CCNA_00854 0.34 +0.2
929,694 + CCNA_00854 0.34 -1.2
929,703 - CCNA_00854 0.35 +0.6
929,711 + CCNA_00854 0.35 +0.2
929,711 + CCNA_00854 0.35 -2.1
929,744 + CCNA_00854 0.38 -0.3
929,752 - CCNA_00854 0.38 +0.5
929,844 + CCNA_00854 0.44 -0.5
929,861 - CCNA_00854 0.45 -1.9
929,915 + CCNA_00854 0.48 -1.3
929,915 + CCNA_00854 0.48 -0.1
929,945 + CCNA_00854 0.50 +0.8
929,945 - CCNA_00854 0.50 -2.3
930,017 - CCNA_00854 0.55 -1.6
930,049 - CCNA_00854 0.57 -1.0
930,068 - CCNA_00854 0.58 +0.9
930,076 - CCNA_00854 0.58 +0.6
930,093 + CCNA_00854 0.59 +0.0
930,122 + CCNA_00854 0.61 -0.8
930,132 + CCNA_00854 0.62 -0.3
930,140 - CCNA_00854 0.62 +0.8
930,140 - CCNA_00854 0.62 +0.3
930,179 + CCNA_00854 0.65 +0.1
930,189 + CCNA_00854 0.65 -1.3
930,206 + CCNA_00854 0.67 +0.1
930,232 + CCNA_00854 0.68 +0.3
930,232 + CCNA_00854 0.68 -2.1
930,232 + CCNA_00854 0.68 +1.0
930,240 - CCNA_00854 0.69 -1.6
930,245 - CCNA_00854 0.69 +0.2
930,265 - CCNA_00854 0.70 -1.1
930,270 - CCNA_00854 0.71 -2.2
930,286 - CCNA_00854 0.72 -0.1
930,293 + CCNA_00854 0.72 -0.8
930,316 - CCNA_00854 0.73 -0.6
930,317 + CCNA_00854 0.74 +0.0
930,321 - CCNA_00854 0.74 -0.4
930,392 + CCNA_00854 0.78 +0.2
930,489 + CCNA_00854 0.84 +2.5
930,489 + CCNA_00854 0.84 -0.2
930,489 + CCNA_00854 0.84 -0.4
930,522 + CCNA_00854 0.86 +0.3
930,615 - -1.1
930,625 - -1.1
930,645 + -1.5
930,652 + -0.1
930,659 - -0.2
930,671 + -2.4
930,673 + -0.8
930,681 - +0.2
930,699 + -1.2
930,702 - -2.9
930,702 - -0.5
930,727 - -1.3
930,741 - +1.2
930,741 - -2.1
930,782 - -0.9
930,796 + +0.2
930,801 + +0.4
930,804 - +0.0
930,820 + -0.2
930,835 - CCNA_00855 0.12 -0.9
930,845 - CCNA_00855 0.13 -1.2
930,845 - CCNA_00855 0.13 +0.5
930,848 + CCNA_00855 0.13 -2.4
930,900 + CCNA_00855 0.19 -1.0
930,900 + CCNA_00855 0.19 -1.3
930,900 + CCNA_00855 0.19 -0.3
930,900 + CCNA_00855 0.19 -0.6
930,908 - CCNA_00855 0.20 -2.5
930,918 + CCNA_00855 0.21 +1.0
930,918 + CCNA_00855 0.21 -0.1
930,923 + CCNA_00855 0.22 -0.9
931,027 + CCNA_00855 0.34 -0.3
931,032 + CCNA_00855 0.35 +0.3
931,040 - CCNA_00855 0.36 -1.6
931,045 + CCNA_00855 0.36 -0.6
931,050 + CCNA_00855 0.37 -1.4
931,070 + CCNA_00855 0.39 -1.6
931,078 + CCNA_00855 0.40 -1.6
931,078 + CCNA_00855 0.40 +2.2
931,086 - CCNA_00855 0.41 +0.9
931,110 - CCNA_00855 0.44 +0.1
931,129 - CCNA_00855 0.46 -0.5
931,139 - CCNA_00855 0.47 -0.5
931,139 - CCNA_00855 0.47 -0.5
931,140 - CCNA_00855 0.47 -0.5
931,147 + CCNA_00855 0.48 -2.3
931,155 - CCNA_00855 0.49 -1.5
931,155 - CCNA_00855 0.49 +0.1
931,155 - CCNA_00855 0.49 -1.4
931,174 + CCNA_00855 0.51 +0.4
931,194 - CCNA_00855 0.53 +0.6
931,194 - CCNA_00855 0.53 +0.2
931,206 + CCNA_00855 0.55 -1.2
931,219 - CCNA_00855 0.56 -0.4
931,221 + CCNA_00855 0.57 -0.5
931,237 - CCNA_00855 0.59 -0.5
931,297 + CCNA_00855 0.66 -0.3
931,305 - CCNA_00855 0.66 +0.6
931,319 + CCNA_00855 0.68 +2.5
931,322 - CCNA_00855 0.68 -0.6
931,333 + CCNA_00855 0.70 -0.5
931,341 - CCNA_00855 0.71 -0.4
931,358 + CCNA_00855 0.73 -0.5
931,433 - CCNA_00855 0.81 +0.5
931,444 + CCNA_00855 0.83 -0.1
931,444 + CCNA_00855 0.83 -0.6
931,452 - CCNA_00855 0.84 +1.4
931,470 + CCNA_00855 0.86 +1.8
931,470 + CCNA_00855 0.86 -2.9
931,478 - CCNA_00855 0.87 -0.7
931,478 - CCNA_00855 0.87 -1.9
931,478 - CCNA_00855 0.87 -1.6
931,512 - -0.6
931,534 - +1.1
931,540 + +0.9
931,570 - -0.4
931,592 + -0.8
931,600 - -1.3
931,608 + -1.1
931,613 - +0.5
931,639 + +1.4
931,639 + -0.5
931,652 - +0.9
931,652 - +0.2
931,681 - +0.2
931,693 - +0.2

Or see this region's nucleotide sequence