Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00123

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00120 and CCNA_00121 overlap by 4 nucleotidesCCNA_00121 and CCNA_00122 are separated by 8 nucleotidesCCNA_00122 and CCNA_00123 are separated by 72 nucleotidesCCNA_00123 and CCNA_00124 are separated by 143 nucleotidesCCNA_00124 and CCNA_00125 are separated by 95 nucleotides CCNA_00120: CCNA_00120 - putative acetyltransferase, at 132,435 to 132,953 _00120 CCNA_00121: CCNA_00121 - hypothetical protein, at 132,950 to 133,408 _00121 CCNA_00122: CCNA_00122 - hypothetical protein, at 133,417 to 133,827 _00122 CCNA_00123: CCNA_00123 - 3-hydroxyacyl CoA dehydrogenase, at 133,900 to 134,682 _00123 CCNA_00124: CCNA_00124 - hypothetical protein, at 134,826 to 135,413 _00124 CCNA_00125: CCNA_00125 - amino acid efflux permease, at 135,509 to 136,177 _00125 Position (kb) 133 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 132.925 kb on + strandat 132.930 kb on + strandat 132.930 kb on + strandat 132.930 kb on + strandat 132.933 kb on - strandat 132.938 kb on - strandat 132.938 kb on - strandat 132.964 kb on + strandat 132.974 kb on + strandat 132.994 kb on + strandat 133.026 kb on + strand, within CCNA_00121at 133.026 kb on + strand, within CCNA_00121at 133.026 kb on + strand, within CCNA_00121at 133.029 kb on - strand, within CCNA_00121at 133.030 kb on + strand, within CCNA_00121at 133.034 kb on - strand, within CCNA_00121at 133.034 kb on - strand, within CCNA_00121at 133.034 kb on - strand, within CCNA_00121at 133.044 kb on - strand, within CCNA_00121at 133.045 kb on - strand, within CCNA_00121at 133.053 kb on - strand, within CCNA_00121at 133.073 kb on - strand, within CCNA_00121at 133.113 kb on + strand, within CCNA_00121at 133.151 kb on + strand, within CCNA_00121at 133.164 kb on - strand, within CCNA_00121at 133.169 kb on - strand, within CCNA_00121at 133.186 kb on + strand, within CCNA_00121at 133.215 kb on - strand, within CCNA_00121at 133.254 kb on - strand, within CCNA_00121at 133.259 kb on - strand, within CCNA_00121at 133.259 kb on - strand, within CCNA_00121at 133.261 kb on + strand, within CCNA_00121at 133.261 kb on + strand, within CCNA_00121at 133.261 kb on + strand, within CCNA_00121at 133.261 kb on - strand, within CCNA_00121at 133.261 kb on - strand, within CCNA_00121at 133.313 kb on + strand, within CCNA_00121at 133.313 kb on + strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.321 kb on - strand, within CCNA_00121at 133.335 kb on + strand, within CCNA_00121at 133.335 kb on + strand, within CCNA_00121at 133.343 kb on - strand, within CCNA_00121at 133.343 kb on - strand, within CCNA_00121at 133.343 kb on - strand, within CCNA_00121at 133.343 kb on - strand, within CCNA_00121at 133.362 kb on + strand, within CCNA_00121at 133.362 kb on + strand, within CCNA_00121at 133.370 kb on + strandat 133.370 kb on - strandat 133.378 kb on - strandat 133.383 kb on - strandat 133.406 kb on - strandat 133.426 kb on + strandat 133.455 kb on - strandat 133.489 kb on - strand, within CCNA_00122at 133.593 kb on - strand, within CCNA_00122at 133.609 kb on - strand, within CCNA_00122at 133.641 kb on + strand, within CCNA_00122at 133.759 kb on - strand, within CCNA_00122at 133.808 kb on + strandat 133.830 kb on + strandat 133.830 kb on + strandat 133.830 kb on + strandat 133.838 kb on - strandat 133.960 kb on + strandat 133.961 kb on - strandat 133.997 kb on - strand, within CCNA_00123at 133.997 kb on - strand, within CCNA_00123at 133.999 kb on + strand, within CCNA_00123at 134.022 kb on - strand, within CCNA_00123at 134.027 kb on + strand, within CCNA_00123at 134.180 kb on - strand, within CCNA_00123at 134.204 kb on - strand, within CCNA_00123at 134.217 kb on + strand, within CCNA_00123at 134.245 kb on + strand, within CCNA_00123at 134.253 kb on - strand, within CCNA_00123at 134.253 kb on - strand, within CCNA_00123at 134.258 kb on - strand, within CCNA_00123at 134.290 kb on + strand, within CCNA_00123at 134.343 kb on + strand, within CCNA_00123at 134.401 kb on + strand, within CCNA_00123at 134.428 kb on + strand, within CCNA_00123at 134.469 kb on + strand, within CCNA_00123at 134.482 kb on - strand, within CCNA_00123at 134.501 kb on - strand, within CCNA_00123at 134.501 kb on - strand, within CCNA_00123at 134.529 kb on + strand, within CCNA_00123at 134.576 kb on - strand, within CCNA_00123at 134.588 kb on - strand, within CCNA_00123at 134.607 kb on + strandat 134.644 kb on - strandat 134.676 kb on + strandat 134.676 kb on + strandat 134.681 kb on + strandat 134.802 kb on + strandat 134.809 kb on + strandat 134.810 kb on - strandat 134.882 kb on + strandat 134.890 kb on - strand, within CCNA_00124at 134.890 kb on - strand, within CCNA_00124at 134.944 kb on + strand, within CCNA_00124at 134.952 kb on + strand, within CCNA_00124at 134.960 kb on - strand, within CCNA_00124at 134.962 kb on + strand, within CCNA_00124at 134.970 kb on - strand, within CCNA_00124at 134.991 kb on - strand, within CCNA_00124at 134.998 kb on + strand, within CCNA_00124at 134.998 kb on + strand, within CCNA_00124at 134.998 kb on + strand, within CCNA_00124at 134.998 kb on + strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.007 kb on - strand, within CCNA_00124at 135.008 kb on + strand, within CCNA_00124at 135.016 kb on - strand, within CCNA_00124at 135.024 kb on + strand, within CCNA_00124at 135.033 kb on - strand, within CCNA_00124at 135.035 kb on + strand, within CCNA_00124at 135.038 kb on - strand, within CCNA_00124at 135.043 kb on - strand, within CCNA_00124at 135.066 kb on + strand, within CCNA_00124at 135.081 kb on + strand, within CCNA_00124at 135.121 kb on - strand, within CCNA_00124at 135.121 kb on - strand, within CCNA_00124at 135.121 kb on - strand, within CCNA_00124at 135.121 kb on - strand, within CCNA_00124at 135.162 kb on - strand, within CCNA_00124at 135.165 kb on + strand, within CCNA_00124at 135.165 kb on + strand, within CCNA_00124at 135.173 kb on - strand, within CCNA_00124at 135.201 kb on + strand, within CCNA_00124at 135.233 kb on + strand, within CCNA_00124at 135.242 kb on - strand, within CCNA_00124at 135.243 kb on + strand, within CCNA_00124at 135.257 kb on - strand, within CCNA_00124at 135.319 kb on - strand, within CCNA_00124at 135.370 kb on + strandat 135.374 kb on + strandat 135.378 kb on - strandat 135.382 kb on - strandat 135.443 kb on + strandat 135.456 kb on - strandat 135.610 kb on + strand, within CCNA_00125at 135.613 kb on - strand, within CCNA_00125at 135.618 kb on - strand, within CCNA_00125at 135.632 kb on + strand, within CCNA_00125at 135.647 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.657 kb on - strand, within CCNA_00125

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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132,925 + +0.6
132,930 + +0.6
132,930 + -0.1
132,930 + -0.8
132,933 - +0.2
132,938 - -0.3
132,938 - +1.8
132,964 + +0.7
132,974 + -0.7
132,994 + +0.2
133,026 + CCNA_00121 0.17 -0.7
133,026 + CCNA_00121 0.17 +0.5
133,026 + CCNA_00121 0.17 +0.7
133,029 - CCNA_00121 0.17 +1.0
133,030 + CCNA_00121 0.17 +0.3
133,034 - CCNA_00121 0.18 -0.1
133,034 - CCNA_00121 0.18 +0.3
133,034 - CCNA_00121 0.18 +0.4
133,044 - CCNA_00121 0.20 +0.0
133,045 - CCNA_00121 0.21 +0.8
133,053 - CCNA_00121 0.22 +0.2
133,073 - CCNA_00121 0.27 -0.2
133,113 + CCNA_00121 0.36 -0.1
133,151 + CCNA_00121 0.44 -0.9
133,164 - CCNA_00121 0.47 -1.1
133,169 - CCNA_00121 0.48 -1.9
133,186 + CCNA_00121 0.51 -0.7
133,215 - CCNA_00121 0.58 +0.2
133,254 - CCNA_00121 0.66 -2.1
133,259 - CCNA_00121 0.67 +0.7
133,259 - CCNA_00121 0.67 -0.0
133,261 + CCNA_00121 0.68 -0.9
133,261 + CCNA_00121 0.68 -0.5
133,261 + CCNA_00121 0.68 -0.3
133,261 - CCNA_00121 0.68 +0.6
133,261 - CCNA_00121 0.68 +0.4
133,313 + CCNA_00121 0.79 +0.2
133,313 + CCNA_00121 0.79 -0.7
133,321 - CCNA_00121 0.81 +0.3
133,321 - CCNA_00121 0.81 +0.2
133,321 - CCNA_00121 0.81 +0.7
133,321 - CCNA_00121 0.81 -0.5
133,321 - CCNA_00121 0.81 +0.6
133,335 + CCNA_00121 0.84 -0.6
133,335 + CCNA_00121 0.84 +0.3
133,343 - CCNA_00121 0.86 -0.4
133,343 - CCNA_00121 0.86 +0.4
133,343 - CCNA_00121 0.86 +0.4
133,343 - CCNA_00121 0.86 -1.9
133,362 + CCNA_00121 0.90 -2.9
133,362 + CCNA_00121 0.90 -0.9
133,370 + -0.3
133,370 - -1.7
133,378 - -0.2
133,383 - -1.3
133,406 - +0.1
133,426 + -1.6
133,455 - +0.4
133,489 - CCNA_00122 0.18 -0.9
133,593 - CCNA_00122 0.43 +0.1
133,609 - CCNA_00122 0.47 +0.1
133,641 + CCNA_00122 0.55 -0.2
133,759 - CCNA_00122 0.83 +0.6
133,808 + -0.0
133,830 + -0.3
133,830 + +0.8
133,830 + +0.0
133,838 - -1.6
133,960 + -0.3
133,961 - +1.9
133,997 - CCNA_00123 0.12 +0.5
133,997 - CCNA_00123 0.12 -1.0
133,999 + CCNA_00123 0.13 +0.7
134,022 - CCNA_00123 0.16 +0.3
134,027 + CCNA_00123 0.16 -3.3
134,180 - CCNA_00123 0.36 -1.8
134,204 - CCNA_00123 0.39 -1.4
134,217 + CCNA_00123 0.40 -0.4
134,245 + CCNA_00123 0.44 +0.1
134,253 - CCNA_00123 0.45 -1.0
134,253 - CCNA_00123 0.45 -3.3
134,258 - CCNA_00123 0.46 -2.4
134,290 + CCNA_00123 0.50 -0.5
134,343 + CCNA_00123 0.57 -1.3
134,401 + CCNA_00123 0.64 +0.3
134,428 + CCNA_00123 0.67 -1.3
134,469 + CCNA_00123 0.73 -0.3
134,482 - CCNA_00123 0.74 -0.2
134,501 - CCNA_00123 0.77 +0.2
134,501 - CCNA_00123 0.77 -0.6
134,529 + CCNA_00123 0.80 -1.2
134,576 - CCNA_00123 0.86 +1.5
134,588 - CCNA_00123 0.88 -0.8
134,607 + -0.3
134,644 - -0.4
134,676 + +0.6
134,676 + +0.7
134,681 + +0.2
134,802 + -2.9
134,809 + +0.8
134,810 - +0.7
134,882 + +1.6
134,890 - CCNA_00124 0.11 +0.7
134,890 - CCNA_00124 0.11 +0.8
134,944 + CCNA_00124 0.20 -0.3
134,952 + CCNA_00124 0.21 -1.7
134,960 - CCNA_00124 0.23 +1.3
134,962 + CCNA_00124 0.23 -0.7
134,970 - CCNA_00124 0.24 +1.0
134,991 - CCNA_00124 0.28 -0.5
134,998 + CCNA_00124 0.29 -0.8
134,998 + CCNA_00124 0.29 -2.1
134,998 + CCNA_00124 0.29 -1.6
134,998 + CCNA_00124 0.29 -2.3
135,006 - CCNA_00124 0.31 +1.3
135,006 - CCNA_00124 0.31 -0.4
135,006 - CCNA_00124 0.31 +0.4
135,006 - CCNA_00124 0.31 +1.8
135,006 - CCNA_00124 0.31 -1.1
135,007 - CCNA_00124 0.31 -0.3
135,008 + CCNA_00124 0.31 +0.1
135,016 - CCNA_00124 0.32 +0.7
135,024 + CCNA_00124 0.34 -0.0
135,033 - CCNA_00124 0.35 +0.9
135,035 + CCNA_00124 0.36 -1.3
135,038 - CCNA_00124 0.36 +0.1
135,043 - CCNA_00124 0.37 +0.7
135,066 + CCNA_00124 0.41 -0.9
135,081 + CCNA_00124 0.43 -1.3
135,121 - CCNA_00124 0.50 +1.0
135,121 - CCNA_00124 0.50 +1.1
135,121 - CCNA_00124 0.50 +0.5
135,121 - CCNA_00124 0.50 -0.1
135,162 - CCNA_00124 0.57 +0.7
135,165 + CCNA_00124 0.58 -1.4
135,165 + CCNA_00124 0.58 +0.1
135,173 - CCNA_00124 0.59 +0.7
135,201 + CCNA_00124 0.64 -2.6
135,233 + CCNA_00124 0.69 -1.9
135,242 - CCNA_00124 0.71 +0.3
135,243 + CCNA_00124 0.71 -1.3
135,257 - CCNA_00124 0.73 +0.4
135,319 - CCNA_00124 0.84 +0.2
135,370 + -0.1
135,374 + -0.3
135,378 - +0.4
135,382 - -2.1
135,443 + +0.8
135,456 - +0.7
135,610 + CCNA_00125 0.15 -0.7
135,613 - CCNA_00125 0.16 -1.4
135,618 - CCNA_00125 0.16 +0.4
135,632 + CCNA_00125 0.18 -1.1
135,647 - CCNA_00125 0.21 +1.2
135,652 - CCNA_00125 0.21 +1.0
135,652 - CCNA_00125 0.21 +0.8
135,652 - CCNA_00125 0.21 -0.2
135,652 - CCNA_00125 0.21 +0.2
135,657 - CCNA_00125 0.22 +0.2

Or see this region's nucleotide sequence