Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07195

Experiment: Benzethonium chloride 0.0016 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07185 and BPHYT_RS07190 are separated by 19 nucleotidesBPHYT_RS07190 and BPHYT_RS07195 are separated by 13 nucleotidesBPHYT_RS07195 and BPHYT_RS07200 are separated by 687 nucleotides BPHYT_RS07185: BPHYT_RS07185 - alanine acetyltransferase, at 1,632,132 to 1,632,674 _RS07185 BPHYT_RS07190: BPHYT_RS07190 - acetyltransferase, at 1,632,694 to 1,633,227 _RS07190 BPHYT_RS07195: BPHYT_RS07195 - multidrug efflux RND transporter permease subunit, at 1,633,241 to 1,636,453 _RS07195 BPHYT_RS07200: BPHYT_RS07200 - AraC family transcriptional regulator, at 1,637,141 to 1,638,136 _RS07200 Position (kb) 1633 1634 1635 1636 1637Strain fitness (log2 ratio) -1 0 1at 1632.959 kb on + strand, within BPHYT_RS07190at 1632.960 kb on - strand, within BPHYT_RS07190at 1632.983 kb on - strand, within BPHYT_RS07190at 1633.344 kb on - strandat 1633.386 kb on - strandat 1633.463 kb on - strandat 1633.626 kb on + strand, within BPHYT_RS07195at 1634.069 kb on + strand, within BPHYT_RS07195at 1634.390 kb on + strand, within BPHYT_RS07195at 1634.391 kb on - strand, within BPHYT_RS07195at 1634.898 kb on - strand, within BPHYT_RS07195at 1634.930 kb on + strand, within BPHYT_RS07195at 1635.518 kb on + strand, within BPHYT_RS07195at 1635.521 kb on - strand, within BPHYT_RS07195at 1635.815 kb on + strand, within BPHYT_RS07195at 1636.012 kb on + strand, within BPHYT_RS07195at 1636.103 kb on + strand, within BPHYT_RS07195at 1636.533 kb on + strandat 1636.569 kb on - strandat 1637.137 kb on + strandat 1637.161 kb on + strandat 1637.181 kb on + strandat 1637.182 kb on - strandat 1637.182 kb on - strandat 1637.185 kb on + strandat 1637.186 kb on - strandat 1637.207 kb on - strandat 1637.333 kb on + strand, within BPHYT_RS07200

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0016 mM
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1,632,959 + BPHYT_RS07190 0.50 +0.4
1,632,960 - BPHYT_RS07190 0.50 +0.8
1,632,983 - BPHYT_RS07190 0.54 +0.4
1,633,344 - -0.2
1,633,386 - -0.3
1,633,463 - +0.1
1,633,626 + BPHYT_RS07195 0.12 +0.6
1,634,069 + BPHYT_RS07195 0.26 +0.0
1,634,390 + BPHYT_RS07195 0.36 -0.3
1,634,391 - BPHYT_RS07195 0.36 -1.5
1,634,898 - BPHYT_RS07195 0.52 -0.4
1,634,930 + BPHYT_RS07195 0.53 -0.1
1,635,518 + BPHYT_RS07195 0.71 -0.4
1,635,521 - BPHYT_RS07195 0.71 -0.4
1,635,815 + BPHYT_RS07195 0.80 -0.6
1,636,012 + BPHYT_RS07195 0.86 -1.1
1,636,103 + BPHYT_RS07195 0.89 -0.5
1,636,533 + -0.7
1,636,569 - -0.1
1,637,137 + +0.0
1,637,161 + +0.7
1,637,181 + -1.4
1,637,182 - -0.1
1,637,182 - -0.2
1,637,185 + -1.1
1,637,186 - -0.3
1,637,207 - -0.5
1,637,333 + BPHYT_RS07200 0.19 -1.1

Or see this region's nucleotide sequence