Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29650

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29640 and AO356_29645 overlap by 4 nucleotidesAO356_29645 and AO356_29650 overlap by 4 nucleotidesAO356_29650 and AO356_29655 are separated by 61 nucleotidesAO356_29655 and AO356_29660 are separated by 164 nucleotides AO356_29640: AO356_29640 - FAD-dependent oxidoreductase, at 6,896,124 to 6,897,413 _29640 AO356_29645: AO356_29645 - glutamine ABC transporter ATP-binding protein, at 6,897,410 to 6,898,156 _29645 AO356_29650: AO356_29650 - amino acid ABC transporter permease, at 6,898,153 to 6,898,809 _29650 AO356_29655: AO356_29655 - ABC transporter substrate-binding protein, at 6,898,871 to 6,899,629 _29655 AO356_29660: AO356_29660 - IclR family transcriptional regulator, at 6,899,794 to 6,900,570 _29660 Position (kb) 6898 6899Strain fitness (log2 ratio) -2 -1 0 1at 6897.489 kb on - strand, within AO356_29645at 6897.842 kb on + strand, within AO356_29645at 6897.847 kb on - strand, within AO356_29645at 6897.847 kb on - strand, within AO356_29645at 6898.000 kb on - strand, within AO356_29645at 6898.000 kb on - strand, within AO356_29645at 6898.070 kb on + strand, within AO356_29645at 6898.071 kb on - strand, within AO356_29645at 6898.071 kb on - strand, within AO356_29645at 6898.139 kb on - strandat 6898.251 kb on - strand, within AO356_29650at 6898.251 kb on - strand, within AO356_29650at 6898.370 kb on + strand, within AO356_29650at 6898.592 kb on + strand, within AO356_29650at 6898.597 kb on - strand, within AO356_29650at 6898.598 kb on + strand, within AO356_29650at 6898.598 kb on + strand, within AO356_29650at 6898.599 kb on - strand, within AO356_29650at 6898.599 kb on - strand, within AO356_29650at 6898.599 kb on - strand, within AO356_29650at 6898.777 kb on - strandat 6898.777 kb on - strandat 6898.809 kb on + strandat 6899.014 kb on - strand, within AO356_29655at 6899.062 kb on - strand, within AO356_29655at 6899.143 kb on - strand, within AO356_29655at 6899.247 kb on + strand, within AO356_29655at 6899.289 kb on + strand, within AO356_29655at 6899.290 kb on - strand, within AO356_29655at 6899.310 kb on + strand, within AO356_29655at 6899.311 kb on - strand, within AO356_29655at 6899.545 kb on - strand, within AO356_29655at 6899.624 kb on - strandat 6899.634 kb on + strandat 6899.635 kb on - strandat 6899.655 kb on - strandat 6899.663 kb on - strandat 6899.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,897,489 - AO356_29645 0.11 -0.1
6,897,842 + AO356_29645 0.58 -0.6
6,897,847 - AO356_29645 0.59 -0.2
6,897,847 - AO356_29645 0.59 -1.9
6,898,000 - AO356_29645 0.79 -0.4
6,898,000 - AO356_29645 0.79 -0.8
6,898,070 + AO356_29645 0.88 -0.1
6,898,071 - AO356_29645 0.88 -0.5
6,898,071 - AO356_29645 0.88 +0.0
6,898,139 - -0.2
6,898,251 - AO356_29650 0.15 -1.5
6,898,251 - AO356_29650 0.15 +0.0
6,898,370 + AO356_29650 0.33 -0.6
6,898,592 + AO356_29650 0.67 +0.1
6,898,597 - AO356_29650 0.68 -0.2
6,898,598 + AO356_29650 0.68 +0.5
6,898,598 + AO356_29650 0.68 -1.1
6,898,599 - AO356_29650 0.68 -0.3
6,898,599 - AO356_29650 0.68 -0.6
6,898,599 - AO356_29650 0.68 -0.5
6,898,777 - -1.3
6,898,777 - -1.1
6,898,809 + +0.0
6,899,014 - AO356_29655 0.19 +1.0
6,899,062 - AO356_29655 0.25 +0.7
6,899,143 - AO356_29655 0.36 +0.4
6,899,247 + AO356_29655 0.50 +0.1
6,899,289 + AO356_29655 0.55 +0.0
6,899,290 - AO356_29655 0.55 -0.8
6,899,310 + AO356_29655 0.58 +1.1
6,899,311 - AO356_29655 0.58 +0.2
6,899,545 - AO356_29655 0.89 +0.9
6,899,624 - -0.4
6,899,634 + -0.0
6,899,635 - -0.5
6,899,655 - -0.3
6,899,663 - +0.3
6,899,663 - +0.4

Or see this region's nucleotide sequence