Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28675

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28665 and AO356_28670 are separated by 13 nucleotidesAO356_28670 and AO356_28675 are separated by 11 nucleotidesAO356_28675 and AO356_28680 are separated by 12 nucleotidesAO356_28680 and AO356_28685 are separated by 26 nucleotides AO356_28665: AO356_28665 - peptide synthetase, at 6,661,200 to 6,661,802 _28665 AO356_28670: AO356_28670 - glyoxalase, at 6,661,816 to 6,662,265 _28670 AO356_28675: AO356_28675 - glycosyl hydrolase, at 6,662,277 to 6,663,317 _28675 AO356_28680: AO356_28680 - short-chain dehydrogenase, at 6,663,330 to 6,664,124 _28680 AO356_28685: AO356_28685 - betaine-aldehyde dehydrogenase, at 6,664,151 to 6,665,641 _28685 Position (kb) 6662 6663 6664Strain fitness (log2 ratio) -1 0 1at 6661.361 kb on - strand, within AO356_28665at 6661.387 kb on - strand, within AO356_28665at 6661.691 kb on - strand, within AO356_28665at 6661.777 kb on + strandat 6661.778 kb on - strandat 6661.818 kb on - strandat 6662.013 kb on - strand, within AO356_28670at 6662.588 kb on - strand, within AO356_28675at 6663.475 kb on + strand, within AO356_28680at 6663.475 kb on + strand, within AO356_28680at 6663.475 kb on + strand, within AO356_28680at 6663.938 kb on - strand, within AO356_28680at 6663.938 kb on - strand, within AO356_28680at 6664.168 kb on - strandat 6664.168 kb on - strandat 6664.207 kb on + strandat 6664.239 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,661,361 - AO356_28665 0.27 +0.1
6,661,387 - AO356_28665 0.31 +0.2
6,661,691 - AO356_28665 0.81 -1.1
6,661,777 + -1.4
6,661,778 - -0.1
6,661,818 - +0.9
6,662,013 - AO356_28670 0.44 -0.5
6,662,588 - AO356_28675 0.30 -0.7
6,663,475 + AO356_28680 0.18 +0.2
6,663,475 + AO356_28680 0.18 -0.2
6,663,475 + AO356_28680 0.18 -0.1
6,663,938 - AO356_28680 0.76 +0.0
6,663,938 - AO356_28680 0.76 -0.4
6,664,168 - -0.3
6,664,168 - +0.1
6,664,207 + -0.9
6,664,239 + +0.9

Or see this region's nucleotide sequence