Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28660

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28655 and AO356_28660 are separated by 2 nucleotidesAO356_28660 and AO356_28665 are separated by 26 nucleotidesAO356_28665 and AO356_28670 are separated by 13 nucleotides AO356_28655: AO356_28655 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 6,658,700 to 6,660,307 _28655 AO356_28660: AO356_28660 - hydrolase, at 6,660,310 to 6,661,173 _28660 AO356_28665: AO356_28665 - peptide synthetase, at 6,661,200 to 6,661,802 _28665 AO356_28670: AO356_28670 - glyoxalase, at 6,661,816 to 6,662,265 _28670 Position (kb) 6660 6661 6662Strain fitness (log2 ratio) -2 -1 0 1at 6659.441 kb on - strand, within AO356_28655at 6659.441 kb on - strand, within AO356_28655at 6659.511 kb on + strand, within AO356_28655at 6659.661 kb on + strand, within AO356_28655at 6659.662 kb on - strand, within AO356_28655at 6659.665 kb on + strand, within AO356_28655at 6659.666 kb on - strand, within AO356_28655at 6659.704 kb on + strand, within AO356_28655at 6659.706 kb on + strand, within AO356_28655at 6659.706 kb on + strand, within AO356_28655at 6659.833 kb on - strand, within AO356_28655at 6659.850 kb on + strand, within AO356_28655at 6660.021 kb on + strand, within AO356_28655at 6660.021 kb on + strand, within AO356_28655at 6660.022 kb on - strand, within AO356_28655at 6660.073 kb on - strand, within AO356_28655at 6660.229 kb on - strandat 6660.240 kb on + strandat 6660.241 kb on - strandat 6660.338 kb on - strandat 6660.338 kb on - strandat 6660.356 kb on + strandat 6660.357 kb on - strandat 6660.404 kb on + strand, within AO356_28660at 6660.405 kb on - strand, within AO356_28660at 6660.432 kb on + strand, within AO356_28660at 6660.432 kb on + strand, within AO356_28660at 6660.845 kb on + strand, within AO356_28660at 6660.938 kb on + strand, within AO356_28660at 6660.938 kb on + strand, within AO356_28660at 6660.939 kb on - strand, within AO356_28660at 6660.939 kb on - strand, within AO356_28660at 6661.122 kb on - strandat 6661.361 kb on - strand, within AO356_28665at 6661.387 kb on - strand, within AO356_28665at 6661.691 kb on - strand, within AO356_28665at 6661.777 kb on + strandat 6661.778 kb on - strandat 6661.818 kb on - strandat 6662.013 kb on - strand, within AO356_28670

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,659,441 - AO356_28655 0.46 -0.1
6,659,441 - AO356_28655 0.46 +0.7
6,659,511 + AO356_28655 0.50 +0.4
6,659,661 + AO356_28655 0.60 -0.7
6,659,662 - AO356_28655 0.60 +0.8
6,659,665 + AO356_28655 0.60 +0.1
6,659,666 - AO356_28655 0.60 +0.4
6,659,704 + AO356_28655 0.62 +0.8
6,659,706 + AO356_28655 0.63 -0.4
6,659,706 + AO356_28655 0.63 -0.3
6,659,833 - AO356_28655 0.70 +0.9
6,659,850 + AO356_28655 0.72 +0.8
6,660,021 + AO356_28655 0.82 -0.1
6,660,021 + AO356_28655 0.82 -0.3
6,660,022 - AO356_28655 0.82 -1.9
6,660,073 - AO356_28655 0.85 +0.7
6,660,229 - -0.1
6,660,240 + +0.1
6,660,241 - +0.4
6,660,338 - +0.7
6,660,338 - -0.0
6,660,356 + -0.5
6,660,357 - -0.6
6,660,404 + AO356_28660 0.11 +0.7
6,660,405 - AO356_28660 0.11 -0.8
6,660,432 + AO356_28660 0.14 -0.9
6,660,432 + AO356_28660 0.14 +1.0
6,660,845 + AO356_28660 0.62 +0.8
6,660,938 + AO356_28660 0.73 +0.4
6,660,938 + AO356_28660 0.73 +0.3
6,660,939 - AO356_28660 0.73 +0.8
6,660,939 - AO356_28660 0.73 +0.5
6,661,122 - -0.5
6,661,361 - AO356_28665 0.27 +0.1
6,661,387 - AO356_28665 0.31 +0.2
6,661,691 - AO356_28665 0.81 -1.1
6,661,777 + -1.4
6,661,778 - -0.1
6,661,818 - +0.9
6,662,013 - AO356_28670 0.44 -0.5

Or see this region's nucleotide sequence