Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28650

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28645 and AO356_28650 are separated by 179 nucleotidesAO356_28650 and AO356_28655 overlap by 4 nucleotides AO356_28645: AO356_28645 - AraC family transcriptional regulator, at 6,656,818 to 6,657,759 _28645 AO356_28650: AO356_28650 - 2-keto-4-pentenoate hydratase, at 6,657,939 to 6,658,703 _28650 AO356_28655: AO356_28655 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 6,658,700 to 6,660,307 _28655 Position (kb) 6657 6658 6659Strain fitness (log2 ratio) -1 0 1at 6656.996 kb on + strand, within AO356_28645at 6656.997 kb on - strand, within AO356_28645at 6657.140 kb on + strand, within AO356_28645at 6657.141 kb on - strand, within AO356_28645at 6657.686 kb on + strandat 6657.686 kb on + strandat 6657.979 kb on + strandat 6657.979 kb on + strandat 6657.980 kb on - strandat 6658.172 kb on - strand, within AO356_28650at 6658.225 kb on + strand, within AO356_28650at 6658.226 kb on - strand, within AO356_28650at 6658.226 kb on - strand, within AO356_28650at 6658.226 kb on - strand, within AO356_28650at 6658.373 kb on + strand, within AO356_28650at 6658.600 kb on + strand, within AO356_28650at 6659.004 kb on + strand, within AO356_28655at 6659.005 kb on - strand, within AO356_28655at 6659.121 kb on + strand, within AO356_28655at 6659.441 kb on - strand, within AO356_28655at 6659.441 kb on - strand, within AO356_28655at 6659.511 kb on + strand, within AO356_28655at 6659.661 kb on + strand, within AO356_28655at 6659.662 kb on - strand, within AO356_28655at 6659.665 kb on + strand, within AO356_28655at 6659.666 kb on - strand, within AO356_28655

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,656,996 + AO356_28645 0.19 +0.9
6,656,997 - AO356_28645 0.19 +0.2
6,657,140 + AO356_28645 0.34 -0.5
6,657,141 - AO356_28645 0.34 -0.1
6,657,686 + -1.1
6,657,686 + -1.3
6,657,979 + +0.3
6,657,979 + -0.9
6,657,980 - +0.3
6,658,172 - AO356_28650 0.30 +0.0
6,658,225 + AO356_28650 0.37 +0.9
6,658,226 - AO356_28650 0.38 +0.4
6,658,226 - AO356_28650 0.38 +0.7
6,658,226 - AO356_28650 0.38 +0.6
6,658,373 + AO356_28650 0.57 +1.3
6,658,600 + AO356_28650 0.86 +0.0
6,659,004 + AO356_28655 0.19 -0.6
6,659,005 - AO356_28655 0.19 +0.2
6,659,121 + AO356_28655 0.26 -0.6
6,659,441 - AO356_28655 0.46 -0.1
6,659,441 - AO356_28655 0.46 +0.7
6,659,511 + AO356_28655 0.50 +0.4
6,659,661 + AO356_28655 0.60 -0.7
6,659,662 - AO356_28655 0.60 +0.8
6,659,665 + AO356_28655 0.60 +0.1
6,659,666 - AO356_28655 0.60 +0.4

Or see this region's nucleotide sequence