Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28475

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_28465 and AO356_28470 are separated by 183 nucleotidesAO356_28470 and AO356_28475 are separated by 152 nucleotidesAO356_28475 and AO356_28480 are separated by 30 nucleotides AO356_28465: AO356_28465 - LysR family transcriptional regulator, at 6,616,891 to 6,617,799 _28465 AO356_28470: AO356_28470 - hypothetical protein, at 6,617,983 to 6,618,324 _28470 AO356_28475: AO356_28475 - hypothetical protein, at 6,618,477 to 6,618,716 _28475 AO356_28480: AO356_28480 - hypothetical protein, at 6,618,747 to 6,619,682 _28480 Position (kb) 6618 6619Strain fitness (log2 ratio) -1 0 1at 6617.634 kb on - strand, within AO356_28465at 6617.634 kb on - strand, within AO356_28465at 6617.687 kb on - strand, within AO356_28465at 6617.697 kb on + strand, within AO356_28465at 6617.795 kb on + strandat 6617.795 kb on + strandat 6617.796 kb on - strandat 6617.838 kb on - strandat 6618.053 kb on + strand, within AO356_28470at 6618.054 kb on - strand, within AO356_28470at 6618.061 kb on + strand, within AO356_28470at 6618.061 kb on + strand, within AO356_28470at 6618.061 kb on + strand, within AO356_28470at 6618.061 kb on + strand, within AO356_28470at 6618.061 kb on + strand, within AO356_28470at 6618.062 kb on - strand, within AO356_28470at 6618.062 kb on - strand, within AO356_28470at 6618.062 kb on - strand, within AO356_28470at 6618.086 kb on + strand, within AO356_28470at 6618.086 kb on + strand, within AO356_28470at 6618.087 kb on - strand, within AO356_28470at 6618.087 kb on - strand, within AO356_28470at 6618.209 kb on + strand, within AO356_28470at 6618.313 kb on + strandat 6618.426 kb on + strandat 6618.427 kb on - strandat 6618.429 kb on + strandat 6618.435 kb on + strandat 6618.435 kb on + strandat 6618.436 kb on - strandat 6618.436 kb on - strandat 6618.436 kb on - strandat 6618.436 kb on - strandat 6618.442 kb on - strandat 6618.472 kb on + strandat 6618.473 kb on - strandat 6618.540 kb on + strand, within AO356_28475at 6618.553 kb on - strand, within AO356_28475at 6618.645 kb on - strand, within AO356_28475at 6619.083 kb on + strand, within AO356_28480at 6619.240 kb on + strand, within AO356_28480at 6619.357 kb on + strand, within AO356_28480at 6619.357 kb on + strand, within AO356_28480at 6619.358 kb on - strand, within AO356_28480at 6619.361 kb on + strand, within AO356_28480at 6619.361 kb on + strand, within AO356_28480at 6619.362 kb on - strand, within AO356_28480at 6619.362 kb on - strand, within AO356_28480at 6619.362 kb on - strand, within AO356_28480at 6619.469 kb on - strand, within AO356_28480at 6619.658 kb on - strandat 6619.658 kb on - strandat 6619.658 kb on - strandat 6619.658 kb on - strandat 6619.666 kb on + strandat 6619.666 kb on + strandat 6619.667 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
6,617,634 - AO356_28465 0.82 -0.1
6,617,634 - AO356_28465 0.82 -0.5
6,617,687 - AO356_28465 0.88 +0.1
6,617,697 + AO356_28465 0.89 +0.3
6,617,795 + +0.0
6,617,795 + +0.2
6,617,796 - +0.1
6,617,838 - -1.2
6,618,053 + AO356_28470 0.20 +0.7
6,618,054 - AO356_28470 0.21 -0.5
6,618,061 + AO356_28470 0.23 +0.8
6,618,061 + AO356_28470 0.23 -0.2
6,618,061 + AO356_28470 0.23 +0.0
6,618,061 + AO356_28470 0.23 -0.1
6,618,061 + AO356_28470 0.23 +0.3
6,618,062 - AO356_28470 0.23 +0.9
6,618,062 - AO356_28470 0.23 +0.0
6,618,062 - AO356_28470 0.23 -0.0
6,618,086 + AO356_28470 0.30 +0.0
6,618,086 + AO356_28470 0.30 +0.1
6,618,087 - AO356_28470 0.30 -0.6
6,618,087 - AO356_28470 0.30 +0.2
6,618,209 + AO356_28470 0.66 +0.8
6,618,313 + +0.4
6,618,426 + -0.4
6,618,427 - +0.0
6,618,429 + +0.1
6,618,435 + +1.2
6,618,435 + +0.2
6,618,436 - -1.0
6,618,436 - -0.8
6,618,436 - -0.7
6,618,436 - +1.5
6,618,442 - -0.1
6,618,472 + +1.4
6,618,473 - +1.0
6,618,540 + AO356_28475 0.26 +0.8
6,618,553 - AO356_28475 0.32 +1.0
6,618,645 - AO356_28475 0.70 +1.6
6,619,083 + AO356_28480 0.36 -0.3
6,619,240 + AO356_28480 0.53 +0.7
6,619,357 + AO356_28480 0.65 -0.7
6,619,357 + AO356_28480 0.65 +0.2
6,619,358 - AO356_28480 0.65 -1.4
6,619,361 + AO356_28480 0.66 +0.2
6,619,361 + AO356_28480 0.66 +0.7
6,619,362 - AO356_28480 0.66 -0.4
6,619,362 - AO356_28480 0.66 -1.1
6,619,362 - AO356_28480 0.66 -0.0
6,619,469 - AO356_28480 0.77 +0.7
6,619,658 - +0.2
6,619,658 - +0.9
6,619,658 - +0.2
6,619,658 - -0.7
6,619,666 + -0.2
6,619,666 + +0.6
6,619,667 - +0.4

Or see this region's nucleotide sequence