Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28330

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28325 and AO356_28330 are separated by 2 nucleotidesAO356_28330 and AO356_28335 overlap by 8 nucleotides AO356_28325: AO356_28325 - ABC transporter, at 6,585,863 to 6,587,212 _28325 AO356_28330: AO356_28330 - secretion protein HlyD, at 6,587,215 to 6,588,585 _28330 AO356_28335: AO356_28335 - peptidase, at 6,588,578 to 6,590,299 _28335 Position (kb) 6587 6588 6589Strain fitness (log2 ratio) -1 0 1at 6586.276 kb on - strand, within AO356_28325at 6586.278 kb on + strand, within AO356_28325at 6586.278 kb on + strand, within AO356_28325at 6586.279 kb on - strand, within AO356_28325at 6586.279 kb on - strand, within AO356_28325at 6586.279 kb on - strand, within AO356_28325at 6586.279 kb on - strand, within AO356_28325at 6586.279 kb on - strand, within AO356_28325at 6586.672 kb on - strand, within AO356_28325at 6586.785 kb on + strand, within AO356_28325at 6586.786 kb on - strand, within AO356_28325at 6586.786 kb on - strand, within AO356_28325at 6586.786 kb on - strand, within AO356_28325at 6586.935 kb on + strand, within AO356_28325at 6586.935 kb on + strand, within AO356_28325at 6586.936 kb on - strand, within AO356_28325at 6586.960 kb on + strand, within AO356_28325at 6587.100 kb on + strandat 6587.181 kb on - strandat 6587.267 kb on + strandat 6587.393 kb on + strand, within AO356_28330at 6587.394 kb on - strand, within AO356_28330at 6587.981 kb on + strand, within AO356_28330at 6588.554 kb on + strandat 6588.554 kb on + strandat 6588.554 kb on + strandat 6588.555 kb on - strandat 6588.673 kb on + strandat 6588.853 kb on - strand, within AO356_28335at 6589.290 kb on + strand, within AO356_28335at 6589.290 kb on + strand, within AO356_28335at 6589.290 kb on + strand, within AO356_28335at 6589.290 kb on + strand, within AO356_28335at 6589.290 kb on + strand, within AO356_28335at 6589.291 kb on - strand, within AO356_28335at 6589.291 kb on - strand, within AO356_28335at 6589.291 kb on - strand, within AO356_28335at 6589.386 kb on + strand, within AO356_28335

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,586,276 - AO356_28325 0.31 +0.6
6,586,278 + AO356_28325 0.31 +0.8
6,586,278 + AO356_28325 0.31 +0.3
6,586,279 - AO356_28325 0.31 +0.9
6,586,279 - AO356_28325 0.31 -0.8
6,586,279 - AO356_28325 0.31 +0.5
6,586,279 - AO356_28325 0.31 -0.5
6,586,279 - AO356_28325 0.31 +0.5
6,586,672 - AO356_28325 0.60 +0.3
6,586,785 + AO356_28325 0.68 -1.0
6,586,786 - AO356_28325 0.68 +0.5
6,586,786 - AO356_28325 0.68 +1.6
6,586,786 - AO356_28325 0.68 -0.1
6,586,935 + AO356_28325 0.79 +0.7
6,586,935 + AO356_28325 0.79 +1.6
6,586,936 - AO356_28325 0.79 -0.7
6,586,960 + AO356_28325 0.81 -0.5
6,587,100 + -1.0
6,587,181 - -0.8
6,587,267 + +0.3
6,587,393 + AO356_28330 0.13 +0.6
6,587,394 - AO356_28330 0.13 +1.1
6,587,981 + AO356_28330 0.56 +0.3
6,588,554 + -0.3
6,588,554 + -0.4
6,588,554 + +0.3
6,588,555 - -0.2
6,588,673 + -0.1
6,588,853 - AO356_28335 0.16 -1.4
6,589,290 + AO356_28335 0.41 +0.4
6,589,290 + AO356_28335 0.41 +0.1
6,589,290 + AO356_28335 0.41 -0.2
6,589,290 + AO356_28335 0.41 +0.2
6,589,290 + AO356_28335 0.41 +0.6
6,589,291 - AO356_28335 0.41 +0.2
6,589,291 - AO356_28335 0.41 +0.6
6,589,291 - AO356_28335 0.41 +0.3
6,589,386 + AO356_28335 0.47 -0.6

Or see this region's nucleotide sequence