Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28300

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28295 and AO356_28300 are separated by 6 nucleotidesAO356_28300 and AO356_28305 are separated by 193 nucleotides AO356_28295: AO356_28295 - multidrug transporter, at 6,574,526 to 6,575,950 _28295 AO356_28300: AO356_28300 - hypothetical protein, at 6,575,957 to 6,576,163 _28300 AO356_28305: AO356_28305 - coproporphyrinogen III oxidase, at 6,576,357 to 6,577,745 _28305 Position (kb) 6575 6576 6577Strain fitness (log2 ratio) -1 0 1 2at 6574.963 kb on + strand, within AO356_28295at 6574.964 kb on - strand, within AO356_28295at 6574.964 kb on - strand, within AO356_28295at 6574.965 kb on + strand, within AO356_28295at 6574.998 kb on - strand, within AO356_28295at 6574.998 kb on - strand, within AO356_28295at 6574.998 kb on - strand, within AO356_28295at 6575.063 kb on + strand, within AO356_28295at 6575.064 kb on - strand, within AO356_28295at 6575.064 kb on - strand, within AO356_28295at 6575.406 kb on - strand, within AO356_28295at 6575.702 kb on + strand, within AO356_28295at 6575.702 kb on + strand, within AO356_28295at 6575.703 kb on - strand, within AO356_28295at 6575.703 kb on - strand, within AO356_28295at 6575.753 kb on + strand, within AO356_28295at 6575.753 kb on + strand, within AO356_28295at 6575.753 kb on + strand, within AO356_28295at 6575.753 kb on + strand, within AO356_28295at 6575.754 kb on - strand, within AO356_28295at 6575.894 kb on + strandat 6575.919 kb on + strandat 6575.920 kb on - strandat 6576.108 kb on - strand, within AO356_28300at 6576.400 kb on + strandat 6576.401 kb on - strandat 6576.688 kb on + strand, within AO356_28305at 6576.688 kb on + strand, within AO356_28305at 6576.688 kb on + strand, within AO356_28305at 6576.689 kb on - strand, within AO356_28305at 6576.689 kb on - strand, within AO356_28305at 6576.689 kb on - strand, within AO356_28305at 6576.691 kb on + strand, within AO356_28305at 6576.721 kb on + strand, within AO356_28305at 6576.721 kb on + strand, within AO356_28305at 6576.721 kb on + strand, within AO356_28305at 6576.721 kb on + strand, within AO356_28305at 6576.722 kb on - strand, within AO356_28305at 6576.790 kb on + strand, within AO356_28305at 6576.877 kb on + strand, within AO356_28305at 6576.878 kb on - strand, within AO356_28305at 6577.010 kb on - strand, within AO356_28305at 6577.093 kb on + strand, within AO356_28305at 6577.093 kb on + strand, within AO356_28305at 6577.093 kb on + strand, within AO356_28305at 6577.093 kb on + strand, within AO356_28305at 6577.093 kb on + strand, within AO356_28305at 6577.093 kb on + strand, within AO356_28305at 6577.094 kb on - strand, within AO356_28305

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,574,963 + AO356_28295 0.31 -0.0
6,574,964 - AO356_28295 0.31 -0.0
6,574,964 - AO356_28295 0.31 +0.5
6,574,965 + AO356_28295 0.31 -0.2
6,574,998 - AO356_28295 0.33 -0.0
6,574,998 - AO356_28295 0.33 +1.5
6,574,998 - AO356_28295 0.33 +0.6
6,575,063 + AO356_28295 0.38 +0.6
6,575,064 - AO356_28295 0.38 -0.1
6,575,064 - AO356_28295 0.38 -1.4
6,575,406 - AO356_28295 0.62 -1.1
6,575,702 + AO356_28295 0.83 +0.1
6,575,702 + AO356_28295 0.83 -0.3
6,575,703 - AO356_28295 0.83 +0.7
6,575,703 - AO356_28295 0.83 +0.2
6,575,753 + AO356_28295 0.86 -1.3
6,575,753 + AO356_28295 0.86 +0.5
6,575,753 + AO356_28295 0.86 +0.9
6,575,753 + AO356_28295 0.86 -0.9
6,575,754 - AO356_28295 0.86 +0.3
6,575,894 + +0.7
6,575,919 + +0.0
6,575,920 - -0.6
6,576,108 - AO356_28300 0.73 +0.5
6,576,400 + +0.9
6,576,401 - -0.1
6,576,688 + AO356_28305 0.24 +1.4
6,576,688 + AO356_28305 0.24 +0.6
6,576,688 + AO356_28305 0.24 -0.0
6,576,689 - AO356_28305 0.24 +0.2
6,576,689 - AO356_28305 0.24 +1.3
6,576,689 - AO356_28305 0.24 +0.3
6,576,691 + AO356_28305 0.24 -0.1
6,576,721 + AO356_28305 0.26 +0.9
6,576,721 + AO356_28305 0.26 +0.9
6,576,721 + AO356_28305 0.26 -0.9
6,576,721 + AO356_28305 0.26 +0.8
6,576,722 - AO356_28305 0.26 -0.4
6,576,790 + AO356_28305 0.31 +0.5
6,576,877 + AO356_28305 0.37 -0.7
6,576,878 - AO356_28305 0.38 -0.0
6,577,010 - AO356_28305 0.47 +1.8
6,577,093 + AO356_28305 0.53 -0.0
6,577,093 + AO356_28305 0.53 +0.5
6,577,093 + AO356_28305 0.53 -0.6
6,577,093 + AO356_28305 0.53 -0.2
6,577,093 + AO356_28305 0.53 -0.3
6,577,093 + AO356_28305 0.53 +0.2
6,577,094 - AO356_28305 0.53 +0.2

Or see this region's nucleotide sequence