Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28160

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28155 and AO356_28160 are separated by 388 nucleotidesAO356_28160 and AO356_28165 are separated by 76 nucleotides AO356_28155: AO356_28155 - excinuclease ABC subunit A, at 6,430,383 to 6,433,040 _28155 AO356_28160: AO356_28160 - hypothetical protein, at 6,433,429 to 6,434,157 _28160 AO356_28165: AO356_28165 - threonine transporter RhtB, at 6,434,234 to 6,434,833 _28165 Position (kb) 6433 6434 6435Strain fitness (log2 ratio) -3 -2 -1 0 1at 6432.484 kb on - strand, within AO356_28155at 6432.484 kb on - strand, within AO356_28155at 6432.650 kb on + strand, within AO356_28155at 6432.650 kb on + strand, within AO356_28155at 6432.650 kb on + strand, within AO356_28155at 6432.664 kb on - strand, within AO356_28155at 6432.765 kb on + strand, within AO356_28155at 6432.765 kb on + strand, within AO356_28155at 6432.765 kb on + strand, within AO356_28155at 6432.765 kb on + strand, within AO356_28155at 6432.765 kb on + strand, within AO356_28155at 6432.765 kb on + strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.766 kb on - strand, within AO356_28155at 6432.854 kb on + strandat 6432.855 kb on - strandat 6432.855 kb on - strandat 6432.855 kb on - strandat 6433.081 kb on - strandat 6433.082 kb on + strandat 6433.114 kb on + strandat 6433.122 kb on + strandat 6433.122 kb on + strandat 6433.122 kb on + strandat 6433.202 kb on - strandat 6433.225 kb on - strandat 6433.337 kb on + strandat 6433.429 kb on - strandat 6433.524 kb on - strand, within AO356_28160at 6433.646 kb on - strand, within AO356_28160at 6433.974 kb on - strand, within AO356_28160at 6434.187 kb on - strandat 6434.698 kb on - strand, within AO356_28165at 6434.827 kb on - strandat 6434.861 kb on - strandat 6434.966 kb on + strandat 6435.007 kb on + strandat 6435.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,432,484 - AO356_28155 0.79 +1.0
6,432,484 - AO356_28155 0.79 +1.0
6,432,650 + AO356_28155 0.85 -2.4
6,432,650 + AO356_28155 0.85 -2.9
6,432,650 + AO356_28155 0.85 -1.4
6,432,664 - AO356_28155 0.86 -1.2
6,432,765 + AO356_28155 0.90 -0.1
6,432,765 + AO356_28155 0.90 -1.4
6,432,765 + AO356_28155 0.90 -1.8
6,432,765 + AO356_28155 0.90 -0.8
6,432,765 + AO356_28155 0.90 -1.1
6,432,765 + AO356_28155 0.90 -1.1
6,432,766 - AO356_28155 0.90 -0.8
6,432,766 - AO356_28155 0.90 +0.6
6,432,766 - AO356_28155 0.90 +0.7
6,432,766 - AO356_28155 0.90 +0.6
6,432,766 - AO356_28155 0.90 +0.1
6,432,766 - AO356_28155 0.90 -0.1
6,432,766 - AO356_28155 0.90 +0.4
6,432,766 - AO356_28155 0.90 +1.5
6,432,766 - AO356_28155 0.90 -0.1
6,432,766 - AO356_28155 0.90 -0.4
6,432,854 + -1.7
6,432,855 - +0.7
6,432,855 - -0.7
6,432,855 - +0.0
6,433,081 - +0.2
6,433,082 + -0.7
6,433,114 + -0.1
6,433,122 + -0.1
6,433,122 + +0.9
6,433,122 + -0.8
6,433,202 - +1.4
6,433,225 - -0.2
6,433,337 + -0.1
6,433,429 - +1.0
6,433,524 - AO356_28160 0.13 +1.4
6,433,646 - AO356_28160 0.30 +0.1
6,433,974 - AO356_28160 0.75 +1.2
6,434,187 - +0.3
6,434,698 - AO356_28165 0.77 -1.2
6,434,827 - +0.8
6,434,861 - -1.3
6,434,966 + -0.7
6,435,007 + -0.5
6,435,122 + -0.5

Or see this region's nucleotide sequence