Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27630

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27625 and AO356_27630 are separated by 223 nucleotidesAO356_27630 and AO356_27635 overlap by 8 nucleotides AO356_27625: AO356_27625 - histidine kinase, at 6,305,306 to 6,306,976 _27625 AO356_27630: AO356_27630 - chemotaxis protein CheY, at 6,307,200 to 6,307,577 _27630 AO356_27635: AO356_27635 - histidine kinase, at 6,307,570 to 6,308,850 _27635 Position (kb) 6307 6308Strain fitness (log2 ratio) -2 -1 0 1at 6306.315 kb on - strand, within AO356_27625at 6306.338 kb on + strand, within AO356_27625at 6306.338 kb on + strand, within AO356_27625at 6306.339 kb on - strand, within AO356_27625at 6306.339 kb on - strand, within AO356_27625at 6306.339 kb on - strand, within AO356_27625at 6306.464 kb on + strand, within AO356_27625at 6306.464 kb on + strand, within AO356_27625at 6306.539 kb on + strand, within AO356_27625at 6306.539 kb on + strand, within AO356_27625at 6306.540 kb on - strand, within AO356_27625at 6306.602 kb on + strand, within AO356_27625at 6306.775 kb on - strand, within AO356_27625at 6306.775 kb on - strand, within AO356_27625at 6307.121 kb on + strandat 6307.121 kb on + strandat 6307.121 kb on + strandat 6307.121 kb on + strandat 6307.121 kb on + strandat 6307.121 kb on + strandat 6307.122 kb on - strandat 6307.125 kb on + strandat 6307.201 kb on + strandat 6307.201 kb on + strandat 6307.230 kb on + strandat 6307.230 kb on + strandat 6307.231 kb on - strandat 6307.231 kb on - strandat 6307.231 kb on - strandat 6307.385 kb on + strand, within AO356_27630at 6307.504 kb on + strand, within AO356_27630at 6307.505 kb on - strand, within AO356_27630at 6307.551 kb on + strandat 6307.551 kb on + strandat 6307.552 kb on - strandat 6307.599 kb on + strandat 6307.599 kb on + strandat 6307.600 kb on - strandat 6307.600 kb on - strandat 6307.618 kb on - strandat 6307.618 kb on - strandat 6307.831 kb on - strand, within AO356_27635at 6307.831 kb on - strand, within AO356_27635at 6307.905 kb on - strand, within AO356_27635at 6308.349 kb on + strand, within AO356_27635at 6308.567 kb on + strand, within AO356_27635at 6308.567 kb on + strand, within AO356_27635at 6308.567 kb on + strand, within AO356_27635at 6308.567 kb on + strand, within AO356_27635at 6308.568 kb on - strand, within AO356_27635at 6308.568 kb on - strand, within AO356_27635at 6308.568 kb on - strand, within AO356_27635at 6308.568 kb on - strand, within AO356_27635

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,306,315 - AO356_27625 0.60 -1.2
6,306,338 + AO356_27625 0.62 -0.2
6,306,338 + AO356_27625 0.62 -0.3
6,306,339 - AO356_27625 0.62 +0.1
6,306,339 - AO356_27625 0.62 -2.5
6,306,339 - AO356_27625 0.62 -0.6
6,306,464 + AO356_27625 0.69 -0.5
6,306,464 + AO356_27625 0.69 -1.3
6,306,539 + AO356_27625 0.74 -1.9
6,306,539 + AO356_27625 0.74 +0.9
6,306,540 - AO356_27625 0.74 -0.5
6,306,602 + AO356_27625 0.78 +0.5
6,306,775 - AO356_27625 0.88 +0.7
6,306,775 - AO356_27625 0.88 -0.5
6,307,121 + -0.5
6,307,121 + -0.7
6,307,121 + +0.8
6,307,121 + -0.6
6,307,121 + -0.3
6,307,121 + +1.0
6,307,122 - +1.1
6,307,125 + -0.9
6,307,201 + -0.5
6,307,201 + -0.3
6,307,230 + -1.2
6,307,230 + -0.5
6,307,231 - +0.0
6,307,231 - +0.7
6,307,231 - +0.1
6,307,385 + AO356_27630 0.49 -1.3
6,307,504 + AO356_27630 0.80 -0.8
6,307,505 - AO356_27630 0.81 -0.2
6,307,551 + -0.3
6,307,551 + +0.9
6,307,552 - -0.5
6,307,599 + -0.6
6,307,599 + -0.2
6,307,600 - -0.7
6,307,600 - +0.6
6,307,618 - +1.7
6,307,618 - -0.0
6,307,831 - AO356_27635 0.20 -0.0
6,307,831 - AO356_27635 0.20 -0.3
6,307,905 - AO356_27635 0.26 -0.2
6,308,349 + AO356_27635 0.61 -0.4
6,308,567 + AO356_27635 0.78 +0.6
6,308,567 + AO356_27635 0.78 -0.7
6,308,567 + AO356_27635 0.78 -0.5
6,308,567 + AO356_27635 0.78 -0.1
6,308,568 - AO356_27635 0.78 -1.7
6,308,568 - AO356_27635 0.78 +0.2
6,308,568 - AO356_27635 0.78 +1.4
6,308,568 - AO356_27635 0.78 +0.1

Or see this region's nucleotide sequence