Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27390

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27385 and AO356_27390 overlap by 17 nucleotidesAO356_27390 and AO356_27395 are separated by 29 nucleotidesAO356_27395 and AO356_27400 are separated by 150 nucleotides AO356_27385: AO356_27385 - ligand-gated channel protein, at 6,239,696 to 6,241,663 _27385 AO356_27390: AO356_27390 - ATPase, at 6,241,647 to 6,242,996 _27390 AO356_27395: AO356_27395 - chemotaxis protein CheY, at 6,243,026 to 6,243,790 _27395 AO356_27400: AO356_27400 - 1,2-oxophytodienoate reductase, at 6,243,941 to 6,245,059 _27400 Position (kb) 6241 6242 6243Strain fitness (log2 ratio) -1 0 1at 6240.659 kb on + strand, within AO356_27385at 6240.804 kb on - strand, within AO356_27385at 6240.935 kb on + strand, within AO356_27385at 6241.029 kb on - strand, within AO356_27385at 6241.029 kb on - strand, within AO356_27385at 6241.034 kb on + strand, within AO356_27385at 6241.100 kb on + strand, within AO356_27385at 6241.160 kb on + strand, within AO356_27385at 6241.218 kb on - strand, within AO356_27385at 6241.319 kb on + strand, within AO356_27385at 6241.319 kb on + strand, within AO356_27385at 6241.320 kb on - strand, within AO356_27385at 6241.320 kb on - strand, within AO356_27385at 6241.320 kb on - strand, within AO356_27385at 6241.458 kb on - strand, within AO356_27385at 6241.533 kb on - strandat 6241.607 kb on + strandat 6241.622 kb on + strandat 6241.623 kb on - strandat 6241.623 kb on - strandat 6242.056 kb on + strand, within AO356_27390at 6242.503 kb on + strand, within AO356_27390at 6242.504 kb on - strand, within AO356_27390at 6242.560 kb on + strand, within AO356_27390at 6243.422 kb on + strand, within AO356_27395at 6243.423 kb on - strand, within AO356_27395at 6243.474 kb on + strand, within AO356_27395at 6243.829 kb on + strandat 6243.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,240,659 + AO356_27385 0.49 +0.5
6,240,804 - AO356_27385 0.56 -0.6
6,240,935 + AO356_27385 0.63 -0.2
6,241,029 - AO356_27385 0.68 +0.2
6,241,029 - AO356_27385 0.68 -0.5
6,241,034 + AO356_27385 0.68 -0.2
6,241,100 + AO356_27385 0.71 -0.5
6,241,160 + AO356_27385 0.74 -0.3
6,241,218 - AO356_27385 0.77 +0.0
6,241,319 + AO356_27385 0.82 -0.7
6,241,319 + AO356_27385 0.82 -0.6
6,241,320 - AO356_27385 0.83 -0.4
6,241,320 - AO356_27385 0.83 +0.2
6,241,320 - AO356_27385 0.83 +0.9
6,241,458 - AO356_27385 0.90 -0.3
6,241,533 - +0.9
6,241,607 + +0.1
6,241,622 + -0.6
6,241,623 - -0.6
6,241,623 - +0.4
6,242,056 + AO356_27390 0.30 +1.0
6,242,503 + AO356_27390 0.63 -0.0
6,242,504 - AO356_27390 0.63 +0.6
6,242,560 + AO356_27390 0.68 +0.7
6,243,422 + AO356_27395 0.52 -0.3
6,243,423 - AO356_27395 0.52 -0.2
6,243,474 + AO356_27395 0.59 -0.7
6,243,829 + +1.3
6,243,957 - +0.7

Or see this region's nucleotide sequence