Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27235

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27230 and AO356_27235 overlap by 4 nucleotidesAO356_27235 and AO356_27240 overlap by 4 nucleotides AO356_27230: AO356_27230 - hypothetical protein, at 6,205,415 to 6,208,030 _27230 AO356_27235: AO356_27235 - hypothetical protein, at 6,208,027 to 6,209,055 _27235 AO356_27240: AO356_27240 - hypothetical protein, at 6,209,052 to 6,210,074 _27240 Position (kb) 6208 6209 6210Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6207.399 kb on + strand, within AO356_27230at 6207.513 kb on + strand, within AO356_27230at 6207.514 kb on - strand, within AO356_27230at 6207.514 kb on - strand, within AO356_27230at 6207.561 kb on + strand, within AO356_27230at 6207.562 kb on - strand, within AO356_27230at 6207.562 kb on - strand, within AO356_27230at 6207.565 kb on + strand, within AO356_27230at 6207.566 kb on - strand, within AO356_27230at 6207.664 kb on + strand, within AO356_27230at 6207.665 kb on - strand, within AO356_27230at 6207.740 kb on + strand, within AO356_27230at 6207.740 kb on + strand, within AO356_27230at 6207.871 kb on - strandat 6207.892 kb on - strandat 6207.912 kb on + strandat 6207.913 kb on - strandat 6207.935 kb on + strandat 6207.936 kb on - strandat 6207.936 kb on - strandat 6208.313 kb on + strand, within AO356_27235at 6208.313 kb on + strand, within AO356_27235at 6208.313 kb on + strand, within AO356_27235at 6208.314 kb on - strand, within AO356_27235at 6208.314 kb on - strand, within AO356_27235at 6208.317 kb on + strand, within AO356_27235at 6208.317 kb on + strand, within AO356_27235at 6208.317 kb on + strand, within AO356_27235at 6208.318 kb on - strand, within AO356_27235at 6208.318 kb on - strand, within AO356_27235at 6208.346 kb on + strand, within AO356_27235at 6208.347 kb on - strand, within AO356_27235at 6208.347 kb on - strand, within AO356_27235at 6208.439 kb on - strand, within AO356_27235at 6208.451 kb on + strand, within AO356_27235at 6208.451 kb on + strand, within AO356_27235at 6208.452 kb on - strand, within AO356_27235at 6208.452 kb on - strand, within AO356_27235at 6208.458 kb on - strand, within AO356_27235at 6208.508 kb on - strand, within AO356_27235at 6208.524 kb on - strand, within AO356_27235at 6208.592 kb on - strand, within AO356_27235at 6208.631 kb on - strand, within AO356_27235at 6208.631 kb on - strand, within AO356_27235at 6208.631 kb on - strand, within AO356_27235at 6208.733 kb on + strand, within AO356_27235at 6208.736 kb on - strand, within AO356_27235at 6208.761 kb on + strand, within AO356_27235at 6208.816 kb on - strand, within AO356_27235at 6208.816 kb on - strand, within AO356_27235at 6208.875 kb on - strand, within AO356_27235at 6209.026 kb on - strandat 6209.026 kb on - strandat 6209.083 kb on + strandat 6209.084 kb on - strandat 6209.171 kb on + strand, within AO356_27240at 6209.172 kb on - strand, within AO356_27240at 6209.285 kb on + strand, within AO356_27240at 6209.348 kb on - strand, within AO356_27240at 6209.381 kb on - strand, within AO356_27240at 6209.413 kb on - strand, within AO356_27240at 6209.497 kb on + strand, within AO356_27240at 6209.498 kb on - strand, within AO356_27240at 6209.581 kb on + strand, within AO356_27240at 6209.582 kb on - strand, within AO356_27240at 6209.678 kb on + strand, within AO356_27240at 6209.775 kb on + strand, within AO356_27240at 6209.776 kb on - strand, within AO356_27240at 6209.816 kb on + strand, within AO356_27240at 6209.824 kb on - strand, within AO356_27240at 6209.824 kb on - strand, within AO356_27240at 6209.963 kb on + strand, within AO356_27240at 6209.964 kb on - strand, within AO356_27240

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,207,399 + AO356_27230 0.76 +1.7
6,207,513 + AO356_27230 0.80 +2.4
6,207,514 - AO356_27230 0.80 -0.7
6,207,514 - AO356_27230 0.80 -0.1
6,207,561 + AO356_27230 0.82 +2.1
6,207,562 - AO356_27230 0.82 +0.6
6,207,562 - AO356_27230 0.82 -0.2
6,207,565 + AO356_27230 0.82 +0.8
6,207,566 - AO356_27230 0.82 -0.4
6,207,664 + AO356_27230 0.86 +3.5
6,207,665 - AO356_27230 0.86 +0.6
6,207,740 + AO356_27230 0.89 +1.3
6,207,740 + AO356_27230 0.89 +1.8
6,207,871 - +0.1
6,207,892 - +0.4
6,207,912 + +2.9
6,207,913 - +0.8
6,207,935 + +2.4
6,207,936 - +0.2
6,207,936 - -0.8
6,208,313 + AO356_27235 0.28 +1.3
6,208,313 + AO356_27235 0.28 +1.0
6,208,313 + AO356_27235 0.28 +1.9
6,208,314 - AO356_27235 0.28 +0.2
6,208,314 - AO356_27235 0.28 +0.7
6,208,317 + AO356_27235 0.28 +1.2
6,208,317 + AO356_27235 0.28 +1.2
6,208,317 + AO356_27235 0.28 +0.9
6,208,318 - AO356_27235 0.28 +0.4
6,208,318 - AO356_27235 0.28 +0.3
6,208,346 + AO356_27235 0.31 +2.0
6,208,347 - AO356_27235 0.31 +0.6
6,208,347 - AO356_27235 0.31 -1.6
6,208,439 - AO356_27235 0.40 -0.9
6,208,451 + AO356_27235 0.41 +1.2
6,208,451 + AO356_27235 0.41 +0.9
6,208,452 - AO356_27235 0.41 +0.7
6,208,452 - AO356_27235 0.41 +0.3
6,208,458 - AO356_27235 0.42 -0.1
6,208,508 - AO356_27235 0.47 +1.0
6,208,524 - AO356_27235 0.48 -3.1
6,208,592 - AO356_27235 0.55 -0.7
6,208,631 - AO356_27235 0.59 -1.1
6,208,631 - AO356_27235 0.59 -0.5
6,208,631 - AO356_27235 0.59 +0.7
6,208,733 + AO356_27235 0.69 +2.3
6,208,736 - AO356_27235 0.69 -0.1
6,208,761 + AO356_27235 0.71 +1.2
6,208,816 - AO356_27235 0.77 -0.7
6,208,816 - AO356_27235 0.77 -1.0
6,208,875 - AO356_27235 0.82 -0.5
6,209,026 - -0.2
6,209,026 - -0.5
6,209,083 + +1.3
6,209,084 - -0.2
6,209,171 + AO356_27240 0.12 +1.3
6,209,172 - AO356_27240 0.12 -1.2
6,209,285 + AO356_27240 0.23 +1.3
6,209,348 - AO356_27240 0.29 +0.6
6,209,381 - AO356_27240 0.32 +0.3
6,209,413 - AO356_27240 0.35 -0.0
6,209,497 + AO356_27240 0.43 +1.5
6,209,498 - AO356_27240 0.44 -1.0
6,209,581 + AO356_27240 0.52 +1.8
6,209,582 - AO356_27240 0.52 +0.9
6,209,678 + AO356_27240 0.61 +1.6
6,209,775 + AO356_27240 0.71 +0.9
6,209,776 - AO356_27240 0.71 -0.8
6,209,816 + AO356_27240 0.75 +0.5
6,209,824 - AO356_27240 0.75 -0.5
6,209,824 - AO356_27240 0.75 +0.6
6,209,963 + AO356_27240 0.89 +1.4
6,209,964 - AO356_27240 0.89 -0.1

Or see this region's nucleotide sequence