Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27230

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27220 and AO356_27225 overlap by 4 nucleotidesAO356_27225 and AO356_27230 are separated by 14 nucleotidesAO356_27230 and AO356_27235 overlap by 4 nucleotides AO356_27220: AO356_27220 - hypothetical protein, at 6,203,821 to 6,204,951 _27220 AO356_27225: AO356_27225 - polyketide cyclase, at 6,204,948 to 6,205,400 _27225 AO356_27230: AO356_27230 - hypothetical protein, at 6,205,415 to 6,208,030 _27230 AO356_27235: AO356_27235 - hypothetical protein, at 6,208,027 to 6,209,055 _27235 Position (kb) 6205 6206 6207 6208 6209Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6204.501 kb on - strand, within AO356_27220at 6204.501 kb on - strand, within AO356_27220at 6204.570 kb on + strand, within AO356_27220at 6204.570 kb on + strand, within AO356_27220at 6204.570 kb on + strand, within AO356_27220at 6204.573 kb on - strand, within AO356_27220at 6204.573 kb on - strand, within AO356_27220at 6204.578 kb on + strand, within AO356_27220at 6204.578 kb on + strand, within AO356_27220at 6204.578 kb on + strand, within AO356_27220at 6204.716 kb on + strand, within AO356_27220at 6204.716 kb on + strand, within AO356_27220at 6204.716 kb on + strand, within AO356_27220at 6204.729 kb on + strand, within AO356_27220at 6204.733 kb on + strand, within AO356_27220at 6204.733 kb on + strand, within AO356_27220at 6204.733 kb on + strand, within AO356_27220at 6204.734 kb on - strand, within AO356_27220at 6204.734 kb on - strand, within AO356_27220at 6204.734 kb on - strand, within AO356_27220at 6204.814 kb on - strand, within AO356_27220at 6204.882 kb on - strandat 6205.024 kb on - strand, within AO356_27225at 6205.058 kb on - strand, within AO356_27225at 6205.073 kb on + strand, within AO356_27225at 6205.075 kb on + strand, within AO356_27225at 6205.076 kb on - strand, within AO356_27225at 6205.076 kb on - strand, within AO356_27225at 6205.076 kb on - strand, within AO356_27225at 6205.271 kb on + strand, within AO356_27225at 6205.271 kb on + strand, within AO356_27225at 6205.272 kb on - strand, within AO356_27225at 6205.272 kb on - strand, within AO356_27225at 6205.272 kb on - strand, within AO356_27225at 6205.272 kb on - strand, within AO356_27225at 6205.272 kb on - strand, within AO356_27225at 6205.275 kb on + strand, within AO356_27225at 6205.275 kb on + strand, within AO356_27225at 6205.275 kb on + strand, within AO356_27225at 6205.276 kb on - strand, within AO356_27225at 6205.276 kb on - strand, within AO356_27225at 6205.276 kb on - strand, within AO356_27225at 6205.276 kb on - strand, within AO356_27225at 6205.347 kb on + strand, within AO356_27225at 6205.348 kb on - strand, within AO356_27225at 6205.348 kb on - strand, within AO356_27225at 6205.361 kb on + strandat 6205.361 kb on + strandat 6205.362 kb on - strandat 6205.416 kb on + strandat 6205.416 kb on + strandat 6205.416 kb on + strandat 6205.416 kb on + strandat 6205.600 kb on + strandat 6205.601 kb on - strandat 6205.837 kb on + strand, within AO356_27230at 6206.144 kb on + strand, within AO356_27230at 6206.144 kb on + strand, within AO356_27230at 6206.145 kb on - strand, within AO356_27230at 6206.247 kb on + strand, within AO356_27230at 6206.317 kb on + strand, within AO356_27230at 6206.317 kb on + strand, within AO356_27230at 6206.482 kb on + strand, within AO356_27230at 6206.483 kb on - strand, within AO356_27230at 6206.483 kb on - strand, within AO356_27230at 6206.563 kb on - strand, within AO356_27230at 6206.592 kb on + strand, within AO356_27230at 6206.726 kb on + strand, within AO356_27230at 6206.726 kb on + strand, within AO356_27230at 6206.868 kb on - strand, within AO356_27230at 6206.889 kb on + strand, within AO356_27230at 6206.890 kb on - strand, within AO356_27230at 6207.001 kb on - strand, within AO356_27230at 6207.014 kb on + strand, within AO356_27230at 6207.399 kb on + strand, within AO356_27230at 6207.513 kb on + strand, within AO356_27230at 6207.514 kb on - strand, within AO356_27230at 6207.514 kb on - strand, within AO356_27230at 6207.561 kb on + strand, within AO356_27230at 6207.562 kb on - strand, within AO356_27230at 6207.562 kb on - strand, within AO356_27230at 6207.565 kb on + strand, within AO356_27230at 6207.566 kb on - strand, within AO356_27230at 6207.664 kb on + strand, within AO356_27230at 6207.665 kb on - strand, within AO356_27230at 6207.740 kb on + strand, within AO356_27230at 6207.740 kb on + strand, within AO356_27230at 6207.871 kb on - strandat 6207.892 kb on - strandat 6207.912 kb on + strandat 6207.913 kb on - strandat 6207.935 kb on + strandat 6207.936 kb on - strandat 6207.936 kb on - strandat 6208.313 kb on + strand, within AO356_27235at 6208.313 kb on + strand, within AO356_27235at 6208.313 kb on + strand, within AO356_27235at 6208.314 kb on - strand, within AO356_27235at 6208.314 kb on - strand, within AO356_27235at 6208.317 kb on + strand, within AO356_27235at 6208.317 kb on + strand, within AO356_27235at 6208.317 kb on + strand, within AO356_27235at 6208.318 kb on - strand, within AO356_27235at 6208.318 kb on - strand, within AO356_27235at 6208.346 kb on + strand, within AO356_27235at 6208.347 kb on - strand, within AO356_27235at 6208.347 kb on - strand, within AO356_27235at 6208.439 kb on - strand, within AO356_27235at 6208.451 kb on + strand, within AO356_27235at 6208.451 kb on + strand, within AO356_27235at 6208.452 kb on - strand, within AO356_27235at 6208.452 kb on - strand, within AO356_27235at 6208.458 kb on - strand, within AO356_27235at 6208.508 kb on - strand, within AO356_27235at 6208.524 kb on - strand, within AO356_27235at 6208.592 kb on - strand, within AO356_27235at 6208.631 kb on - strand, within AO356_27235at 6208.631 kb on - strand, within AO356_27235at 6208.631 kb on - strand, within AO356_27235at 6208.733 kb on + strand, within AO356_27235at 6208.736 kb on - strand, within AO356_27235at 6208.761 kb on + strand, within AO356_27235at 6208.816 kb on - strand, within AO356_27235at 6208.816 kb on - strand, within AO356_27235at 6208.875 kb on - strand, within AO356_27235at 6209.026 kb on - strandat 6209.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,204,501 - AO356_27220 0.60 +0.2
6,204,501 - AO356_27220 0.60 -0.1
6,204,570 + AO356_27220 0.66 +1.2
6,204,570 + AO356_27220 0.66 +0.8
6,204,570 + AO356_27220 0.66 +1.1
6,204,573 - AO356_27220 0.66 +0.7
6,204,573 - AO356_27220 0.66 -0.4
6,204,578 + AO356_27220 0.67 +0.8
6,204,578 + AO356_27220 0.67 +0.4
6,204,578 + AO356_27220 0.67 -0.1
6,204,716 + AO356_27220 0.79 -0.3
6,204,716 + AO356_27220 0.79 +1.7
6,204,716 + AO356_27220 0.79 -0.0
6,204,729 + AO356_27220 0.80 +2.1
6,204,733 + AO356_27220 0.81 +1.7
6,204,733 + AO356_27220 0.81 +1.9
6,204,733 + AO356_27220 0.81 +0.8
6,204,734 - AO356_27220 0.81 -0.6
6,204,734 - AO356_27220 0.81 +0.9
6,204,734 - AO356_27220 0.81 +0.1
6,204,814 - AO356_27220 0.88 +0.4
6,204,882 - +0.1
6,205,024 - AO356_27225 0.17 +0.6
6,205,058 - AO356_27225 0.24 +0.6
6,205,073 + AO356_27225 0.28 +2.3
6,205,075 + AO356_27225 0.28 +3.4
6,205,076 - AO356_27225 0.28 -1.3
6,205,076 - AO356_27225 0.28 -0.1
6,205,076 - AO356_27225 0.28 +0.7
6,205,271 + AO356_27225 0.71 +2.4
6,205,271 + AO356_27225 0.71 +1.8
6,205,272 - AO356_27225 0.72 -0.6
6,205,272 - AO356_27225 0.72 -0.1
6,205,272 - AO356_27225 0.72 -0.3
6,205,272 - AO356_27225 0.72 -0.0
6,205,272 - AO356_27225 0.72 -0.4
6,205,275 + AO356_27225 0.72 +2.8
6,205,275 + AO356_27225 0.72 +2.8
6,205,275 + AO356_27225 0.72 +3.1
6,205,276 - AO356_27225 0.72 +0.4
6,205,276 - AO356_27225 0.72 -1.0
6,205,276 - AO356_27225 0.72 -0.3
6,205,276 - AO356_27225 0.72 -0.2
6,205,347 + AO356_27225 0.88 +3.7
6,205,348 - AO356_27225 0.88 +0.5
6,205,348 - AO356_27225 0.88 -1.4
6,205,361 + +0.2
6,205,361 + +2.0
6,205,362 - -0.9
6,205,416 + +2.7
6,205,416 + +2.0
6,205,416 + +2.0
6,205,416 + +2.1
6,205,600 + +2.2
6,205,601 - -1.1
6,205,837 + AO356_27230 0.16 +2.0
6,206,144 + AO356_27230 0.28 +1.9
6,206,144 + AO356_27230 0.28 +0.9
6,206,145 - AO356_27230 0.28 +0.4
6,206,247 + AO356_27230 0.32 +2.2
6,206,317 + AO356_27230 0.34 +1.8
6,206,317 + AO356_27230 0.34 +1.4
6,206,482 + AO356_27230 0.41 +1.7
6,206,483 - AO356_27230 0.41 -0.2
6,206,483 - AO356_27230 0.41 +0.3
6,206,563 - AO356_27230 0.44 +0.1
6,206,592 + AO356_27230 0.45 +2.9
6,206,726 + AO356_27230 0.50 +1.2
6,206,726 + AO356_27230 0.50 +2.1
6,206,868 - AO356_27230 0.56 +1.3
6,206,889 + AO356_27230 0.56 +2.5
6,206,890 - AO356_27230 0.56 -0.8
6,207,001 - AO356_27230 0.61 -0.4
6,207,014 + AO356_27230 0.61 +2.0
6,207,399 + AO356_27230 0.76 +1.7
6,207,513 + AO356_27230 0.80 +2.4
6,207,514 - AO356_27230 0.80 -0.7
6,207,514 - AO356_27230 0.80 -0.1
6,207,561 + AO356_27230 0.82 +2.1
6,207,562 - AO356_27230 0.82 +0.6
6,207,562 - AO356_27230 0.82 -0.2
6,207,565 + AO356_27230 0.82 +0.8
6,207,566 - AO356_27230 0.82 -0.4
6,207,664 + AO356_27230 0.86 +3.5
6,207,665 - AO356_27230 0.86 +0.6
6,207,740 + AO356_27230 0.89 +1.3
6,207,740 + AO356_27230 0.89 +1.8
6,207,871 - +0.1
6,207,892 - +0.4
6,207,912 + +2.9
6,207,913 - +0.8
6,207,935 + +2.4
6,207,936 - +0.2
6,207,936 - -0.8
6,208,313 + AO356_27235 0.28 +1.3
6,208,313 + AO356_27235 0.28 +1.0
6,208,313 + AO356_27235 0.28 +1.9
6,208,314 - AO356_27235 0.28 +0.2
6,208,314 - AO356_27235 0.28 +0.7
6,208,317 + AO356_27235 0.28 +1.2
6,208,317 + AO356_27235 0.28 +1.2
6,208,317 + AO356_27235 0.28 +0.9
6,208,318 - AO356_27235 0.28 +0.4
6,208,318 - AO356_27235 0.28 +0.3
6,208,346 + AO356_27235 0.31 +2.0
6,208,347 - AO356_27235 0.31 +0.6
6,208,347 - AO356_27235 0.31 -1.6
6,208,439 - AO356_27235 0.40 -0.9
6,208,451 + AO356_27235 0.41 +1.2
6,208,451 + AO356_27235 0.41 +0.9
6,208,452 - AO356_27235 0.41 +0.7
6,208,452 - AO356_27235 0.41 +0.3
6,208,458 - AO356_27235 0.42 -0.1
6,208,508 - AO356_27235 0.47 +1.0
6,208,524 - AO356_27235 0.48 -3.1
6,208,592 - AO356_27235 0.55 -0.7
6,208,631 - AO356_27235 0.59 -1.1
6,208,631 - AO356_27235 0.59 -0.5
6,208,631 - AO356_27235 0.59 +0.7
6,208,733 + AO356_27235 0.69 +2.3
6,208,736 - AO356_27235 0.69 -0.1
6,208,761 + AO356_27235 0.71 +1.2
6,208,816 - AO356_27235 0.77 -0.7
6,208,816 - AO356_27235 0.77 -1.0
6,208,875 - AO356_27235 0.82 -0.5
6,209,026 - -0.2
6,209,026 - -0.5

Or see this region's nucleotide sequence