Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27205

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27195 and AO356_27200 are separated by 122 nucleotidesAO356_27200 and AO356_27205 are separated by 16 nucleotidesAO356_27205 and AO356_27210 overlap by 4 nucleotides AO356_27195: AO356_27195 - hypothetical protein, at 6,198,495 to 6,199,598 _27195 AO356_27200: AO356_27200 - hypothetical protein, at 6,199,721 to 6,199,966 _27200 AO356_27205: AO356_27205 - hypothetical protein, at 6,199,983 to 6,200,762 _27205 AO356_27210: AO356_27210 - hypothetical protein, at 6,200,759 to 6,203,113 _27210 Position (kb) 6199 6200 6201Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6199.023 kb on + strand, within AO356_27195at 6199.134 kb on - strand, within AO356_27195at 6199.267 kb on + strand, within AO356_27195at 6199.272 kb on + strand, within AO356_27195at 6199.279 kb on - strand, within AO356_27195at 6199.279 kb on - strand, within AO356_27195at 6199.279 kb on - strand, within AO356_27195at 6199.334 kb on + strand, within AO356_27195at 6199.335 kb on - strand, within AO356_27195at 6199.351 kb on + strand, within AO356_27195at 6199.363 kb on + strand, within AO356_27195at 6199.507 kb on - strandat 6199.571 kb on + strandat 6199.571 kb on + strandat 6199.572 kb on - strandat 6199.791 kb on + strand, within AO356_27200at 6199.792 kb on - strand, within AO356_27200at 6199.800 kb on - strand, within AO356_27200at 6199.830 kb on + strand, within AO356_27200at 6199.844 kb on + strand, within AO356_27200at 6199.967 kb on - strandat 6199.967 kb on - strandat 6199.967 kb on - strandat 6200.075 kb on + strand, within AO356_27205at 6200.075 kb on + strand, within AO356_27205at 6200.150 kb on + strand, within AO356_27205at 6200.150 kb on + strand, within AO356_27205at 6200.151 kb on - strand, within AO356_27205at 6200.185 kb on + strand, within AO356_27205at 6200.227 kb on + strand, within AO356_27205at 6200.227 kb on + strand, within AO356_27205at 6200.228 kb on - strand, within AO356_27205at 6200.252 kb on + strand, within AO356_27205at 6200.360 kb on - strand, within AO356_27205at 6200.378 kb on - strand, within AO356_27205at 6200.378 kb on - strand, within AO356_27205at 6200.455 kb on + strand, within AO356_27205at 6200.496 kb on + strand, within AO356_27205at 6200.564 kb on + strand, within AO356_27205at 6200.564 kb on + strand, within AO356_27205at 6200.565 kb on - strand, within AO356_27205at 6200.594 kb on + strand, within AO356_27205at 6200.594 kb on + strand, within AO356_27205at 6200.801 kb on - strandat 6200.807 kb on + strandat 6200.842 kb on + strandat 6201.166 kb on + strand, within AO356_27210at 6201.197 kb on + strand, within AO356_27210at 6201.197 kb on + strand, within AO356_27210at 6201.240 kb on + strand, within AO356_27210at 6201.524 kb on + strand, within AO356_27210at 6201.760 kb on + strand, within AO356_27210

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,199,023 + AO356_27195 0.48 -0.6
6,199,134 - AO356_27195 0.58 -1.3
6,199,267 + AO356_27195 0.70 +0.7
6,199,272 + AO356_27195 0.70 +1.1
6,199,279 - AO356_27195 0.71 +0.6
6,199,279 - AO356_27195 0.71 -0.6
6,199,279 - AO356_27195 0.71 -0.8
6,199,334 + AO356_27195 0.76 +0.1
6,199,335 - AO356_27195 0.76 -0.0
6,199,351 + AO356_27195 0.78 +0.9
6,199,363 + AO356_27195 0.79 +0.2
6,199,507 - -0.3
6,199,571 + +1.3
6,199,571 + +1.0
6,199,572 - -0.5
6,199,791 + AO356_27200 0.28 -0.6
6,199,792 - AO356_27200 0.29 +0.7
6,199,800 - AO356_27200 0.32 -1.8
6,199,830 + AO356_27200 0.44 +0.4
6,199,844 + AO356_27200 0.50 +0.7
6,199,967 - +0.4
6,199,967 - -0.9
6,199,967 - +0.1
6,200,075 + AO356_27205 0.12 +2.9
6,200,075 + AO356_27205 0.12 +2.0
6,200,150 + AO356_27205 0.21 +2.7
6,200,150 + AO356_27205 0.21 +2.1
6,200,151 - AO356_27205 0.22 -0.1
6,200,185 + AO356_27205 0.26 +2.3
6,200,227 + AO356_27205 0.31 +2.6
6,200,227 + AO356_27205 0.31 +1.7
6,200,228 - AO356_27205 0.31 +0.6
6,200,252 + AO356_27205 0.34 +2.5
6,200,360 - AO356_27205 0.48 +1.2
6,200,378 - AO356_27205 0.51 +0.9
6,200,378 - AO356_27205 0.51 +1.9
6,200,455 + AO356_27205 0.61 +2.0
6,200,496 + AO356_27205 0.66 +2.2
6,200,564 + AO356_27205 0.74 +2.7
6,200,564 + AO356_27205 0.74 +2.9
6,200,565 - AO356_27205 0.75 +0.5
6,200,594 + AO356_27205 0.78 +3.3
6,200,594 + AO356_27205 0.78 +2.0
6,200,801 - +0.3
6,200,807 + +2.5
6,200,842 + +2.2
6,201,166 + AO356_27210 0.17 +2.3
6,201,197 + AO356_27210 0.19 +3.4
6,201,197 + AO356_27210 0.19 +1.7
6,201,240 + AO356_27210 0.20 +2.1
6,201,524 + AO356_27210 0.32 +2.8
6,201,760 + AO356_27210 0.43 +1.5

Or see this region's nucleotide sequence