Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27170

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27160 and AO356_27165 are separated by 5 nucleotidesAO356_27165 and AO356_27170 are separated by 161 nucleotidesAO356_27170 and AO356_27175 are separated by 289 nucleotides AO356_27160: AO356_27160 - dihydrodipicolinate synthase, at 6,190,659 to 6,191,552 _27160 AO356_27165: AO356_27165 - hypothetical protein, at 6,191,558 to 6,192,277 _27165 AO356_27170: AO356_27170 - XRE family transcriptional regulator, at 6,192,439 to 6,193,041 _27170 AO356_27175: AO356_27175 - hypothetical protein, at 6,193,331 to 6,193,885 _27175 Position (kb) 6192 6193 6194Strain fitness (log2 ratio) -2 -1 0 1 2at 6191.516 kb on + strandat 6191.537 kb on + strandat 6191.910 kb on + strand, within AO356_27165at 6191.910 kb on + strand, within AO356_27165at 6191.947 kb on - strand, within AO356_27165at 6191.947 kb on - strand, within AO356_27165at 6191.954 kb on - strand, within AO356_27165at 6191.967 kb on + strand, within AO356_27165at 6191.968 kb on - strand, within AO356_27165at 6192.358 kb on + strandat 6192.362 kb on - strandat 6192.600 kb on - strand, within AO356_27170at 6192.795 kb on + strand, within AO356_27170at 6192.796 kb on - strand, within AO356_27170at 6192.979 kb on + strand, within AO356_27170at 6193.039 kb on + strandat 6193.039 kb on + strandat 6193.040 kb on - strandat 6193.040 kb on - strandat 6193.040 kb on - strandat 6193.040 kb on - strandat 6193.207 kb on - strandat 6193.310 kb on - strandat 6193.313 kb on + strandat 6193.314 kb on - strandat 6193.332 kb on + strandat 6193.333 kb on - strandat 6193.488 kb on + strand, within AO356_27175at 6193.489 kb on - strand, within AO356_27175at 6193.489 kb on - strand, within AO356_27175at 6193.489 kb on - strand, within AO356_27175at 6193.490 kb on + strand, within AO356_27175at 6193.490 kb on + strand, within AO356_27175at 6193.491 kb on - strand, within AO356_27175at 6193.671 kb on + strand, within AO356_27175at 6193.899 kb on - strandat 6193.943 kb on + strandat 6193.944 kb on - strandat 6193.944 kb on - strandat 6193.944 kb on - strandat 6193.949 kb on - strandat 6193.949 kb on - strandat 6193.949 kb on - strandat 6193.992 kb on + strandat 6193.992 kb on + strandat 6193.993 kb on - strandat 6193.993 kb on - strandat 6193.993 kb on - strandat 6193.993 kb on - strandat 6194.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,191,516 + +0.3
6,191,537 + -0.5
6,191,910 + AO356_27165 0.49 +0.1
6,191,910 + AO356_27165 0.49 -0.5
6,191,947 - AO356_27165 0.54 +0.6
6,191,947 - AO356_27165 0.54 -0.5
6,191,954 - AO356_27165 0.55 +0.2
6,191,967 + AO356_27165 0.57 +0.1
6,191,968 - AO356_27165 0.57 +0.3
6,192,358 + -0.0
6,192,362 - -0.3
6,192,600 - AO356_27170 0.27 +2.6
6,192,795 + AO356_27170 0.59 +1.6
6,192,796 - AO356_27170 0.59 +0.7
6,192,979 + AO356_27170 0.90 +2.3
6,193,039 + -0.8
6,193,039 + +0.7
6,193,040 - +0.9
6,193,040 - +0.5
6,193,040 - +0.9
6,193,040 - +0.5
6,193,207 - +0.5
6,193,310 - -0.6
6,193,313 + +0.4
6,193,314 - -0.4
6,193,332 + -1.9
6,193,333 - +0.2
6,193,488 + AO356_27175 0.28 +0.2
6,193,489 - AO356_27175 0.28 +0.5
6,193,489 - AO356_27175 0.28 +2.0
6,193,489 - AO356_27175 0.28 +0.4
6,193,490 + AO356_27175 0.29 +0.9
6,193,490 + AO356_27175 0.29 -0.0
6,193,491 - AO356_27175 0.29 +0.6
6,193,671 + AO356_27175 0.61 +0.4
6,193,899 - +0.2
6,193,943 + +0.4
6,193,944 - -0.0
6,193,944 - -2.7
6,193,944 - +1.6
6,193,949 - +0.4
6,193,949 - -0.2
6,193,949 - +0.7
6,193,992 + -0.1
6,193,992 + +0.2
6,193,993 - +0.1
6,193,993 - -0.3
6,193,993 - +0.5
6,193,993 - +1.6
6,194,014 - +0.8

Or see this region's nucleotide sequence