Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26875

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26870 and AO356_26875 are separated by 179 nucleotidesAO356_26875 and AO356_26880 are separated by 33 nucleotidesAO356_26880 and AO356_26885 are separated by 118 nucleotides AO356_26870: AO356_26870 - short-chain dehydrogenase, at 6,118,565 to 6,119,344 _26870 AO356_26875: AO356_26875 - alcohol dehydrogenase, at 6,119,524 to 6,120,456 _26875 AO356_26880: AO356_26880 - DNA-binding protein, at 6,120,490 to 6,121,161 _26880 AO356_26885: AO356_26885 - LysR family transcriptional regulator, at 6,121,280 to 6,122,161 _26885 Position (kb) 6119 6120 6121Strain fitness (log2 ratio) -2 -1 0 1at 6118.545 kb on + strandat 6118.792 kb on + strand, within AO356_26870at 6118.793 kb on - strand, within AO356_26870at 6118.793 kb on - strand, within AO356_26870at 6119.057 kb on + strand, within AO356_26870at 6119.058 kb on - strand, within AO356_26870at 6119.134 kb on - strand, within AO356_26870at 6119.134 kb on - strand, within AO356_26870at 6119.134 kb on - strand, within AO356_26870at 6119.202 kb on - strand, within AO356_26870at 6119.280 kb on - strandat 6119.378 kb on - strandat 6119.378 kb on - strandat 6119.380 kb on - strandat 6119.380 kb on - strandat 6119.380 kb on - strandat 6119.512 kb on + strandat 6119.513 kb on - strandat 6119.549 kb on - strandat 6119.549 kb on - strandat 6119.647 kb on - strand, within AO356_26875at 6119.767 kb on - strand, within AO356_26875at 6120.015 kb on - strand, within AO356_26875at 6120.036 kb on + strand, within AO356_26875at 6120.154 kb on + strand, within AO356_26875at 6120.155 kb on - strand, within AO356_26875at 6120.565 kb on - strand, within AO356_26880at 6120.634 kb on + strand, within AO356_26880at 6120.634 kb on + strand, within AO356_26880at 6120.829 kb on + strand, within AO356_26880at 6120.829 kb on + strand, within AO356_26880at 6120.830 kb on - strand, within AO356_26880at 6120.919 kb on + strand, within AO356_26880at 6120.994 kb on + strand, within AO356_26880at 6120.994 kb on + strand, within AO356_26880at 6120.995 kb on - strand, within AO356_26880at 6121.159 kb on + strandat 6121.159 kb on + strandat 6121.160 kb on - strandat 6121.160 kb on - strandat 6121.177 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,118,545 + +0.7
6,118,792 + AO356_26870 0.29 +1.0
6,118,793 - AO356_26870 0.29 +0.3
6,118,793 - AO356_26870 0.29 -1.8
6,119,057 + AO356_26870 0.63 -0.2
6,119,058 - AO356_26870 0.63 -0.1
6,119,134 - AO356_26870 0.73 -0.5
6,119,134 - AO356_26870 0.73 +0.8
6,119,134 - AO356_26870 0.73 -0.1
6,119,202 - AO356_26870 0.82 -0.3
6,119,280 - +0.2
6,119,378 - -1.2
6,119,378 - +1.1
6,119,380 - +0.7
6,119,380 - -0.3
6,119,380 - -0.1
6,119,512 + -0.5
6,119,513 - +1.3
6,119,549 - +0.2
6,119,549 - -0.3
6,119,647 - AO356_26875 0.13 +0.1
6,119,767 - AO356_26875 0.26 +0.8
6,120,015 - AO356_26875 0.53 +0.7
6,120,036 + AO356_26875 0.55 +1.3
6,120,154 + AO356_26875 0.68 -1.7
6,120,155 - AO356_26875 0.68 +0.5
6,120,565 - AO356_26880 0.11 -0.5
6,120,634 + AO356_26880 0.21 -0.6
6,120,634 + AO356_26880 0.21 -1.1
6,120,829 + AO356_26880 0.50 -1.1
6,120,829 + AO356_26880 0.50 -0.2
6,120,830 - AO356_26880 0.51 -0.6
6,120,919 + AO356_26880 0.64 +0.4
6,120,994 + AO356_26880 0.75 +0.0
6,120,994 + AO356_26880 0.75 +0.3
6,120,995 - AO356_26880 0.75 -0.2
6,121,159 + -0.1
6,121,159 + +0.0
6,121,160 - -0.3
6,121,160 - +0.3
6,121,177 - -0.8

Or see this region's nucleotide sequence