Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26475

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26470 and AO356_26475 are separated by 125 nucleotidesAO356_26475 and AO356_26480 are separated by 363 nucleotides AO356_26470: AO356_26470 - monooxygenase, at 5,998,886 to 6,005,494 _26470 AO356_26475: AO356_26475 - lactoylglutathione lyase, at 6,005,620 to 6,005,997 _26475 AO356_26480: AO356_26480 - hypothetical protein, at 6,006,361 to 6,016,395 _26480 Position (kb) 6005 6006Strain fitness (log2 ratio) -2 -1 0 1 2at 6004.912 kb on - strandat 6004.929 kb on + strandat 6005.035 kb on - strandat 6005.043 kb on + strandat 6005.044 kb on - strandat 6005.062 kb on + strandat 6005.294 kb on + strandat 6005.294 kb on + strandat 6005.319 kb on - strandat 6005.499 kb on - strandat 6005.554 kb on + strandat 6005.554 kb on + strandat 6005.559 kb on - strandat 6005.612 kb on - strandat 6005.672 kb on + strand, within AO356_26475at 6005.672 kb on + strand, within AO356_26475at 6005.673 kb on - strand, within AO356_26475at 6005.788 kb on - strand, within AO356_26475at 6005.966 kb on + strandat 6005.970 kb on + strandat 6005.970 kb on + strandat 6005.971 kb on - strandat 6006.001 kb on - strandat 6006.024 kb on + strandat 6006.025 kb on - strandat 6006.025 kb on - strandat 6006.025 kb on - strandat 6006.025 kb on - strandat 6006.141 kb on + strandat 6006.192 kb on + strandat 6006.563 kb on - strandat 6006.740 kb on - strandat 6006.763 kb on + strandat 6006.763 kb on + strandat 6006.764 kb on - strandat 6006.764 kb on - strandat 6006.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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6,004,912 - -0.8
6,004,929 + +0.5
6,005,035 - -0.1
6,005,043 + +0.2
6,005,044 - -1.1
6,005,062 + -0.9
6,005,294 + -0.1
6,005,294 + +0.2
6,005,319 - +0.0
6,005,499 - +0.2
6,005,554 + -0.6
6,005,554 + -0.9
6,005,559 - -0.9
6,005,612 - +0.2
6,005,672 + AO356_26475 0.14 -0.9
6,005,672 + AO356_26475 0.14 +0.5
6,005,673 - AO356_26475 0.14 -1.3
6,005,788 - AO356_26475 0.44 +0.3
6,005,966 + +0.2
6,005,970 + +0.0
6,005,970 + -0.3
6,005,971 - +0.8
6,006,001 - +0.3
6,006,024 + +0.8
6,006,025 - +1.9
6,006,025 - +0.3
6,006,025 - +0.2
6,006,025 - -0.2
6,006,141 + +0.2
6,006,192 + +0.6
6,006,563 - -1.8
6,006,740 - +0.5
6,006,763 + +0.9
6,006,763 + -0.5
6,006,764 - -0.1
6,006,764 - -0.7
6,006,868 + +0.1

Or see this region's nucleotide sequence