Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25800

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25795 and AO356_25800 are separated by 740 nucleotidesAO356_25800 and AO356_25805 are separated by 26 nucleotides AO356_25795: AO356_25795 - transglutaminase, at 5,832,363 to 5,833,160 _25795 AO356_25800: AO356_25800 - prevent-host-death protein, at 5,833,901 to 5,834,503 _25800 AO356_25805: AO356_25805 - hypothetical protein, at 5,834,530 to 5,836,134 _25805 Position (kb) 5833 5834 5835Strain fitness (log2 ratio) -2 -1 0 1at 5832.903 kb on + strand, within AO356_25795at 5833.056 kb on + strand, within AO356_25795at 5833.056 kb on + strand, within AO356_25795at 5833.158 kb on + strandat 5833.762 kb on + strandat 5833.991 kb on + strand, within AO356_25800at 5833.992 kb on - strand, within AO356_25800at 5834.066 kb on + strand, within AO356_25800at 5834.261 kb on + strand, within AO356_25800at 5834.261 kb on + strand, within AO356_25800at 5834.262 kb on - strand, within AO356_25800at 5834.262 kb on - strand, within AO356_25800at 5834.493 kb on + strandat 5834.509 kb on - strandat 5834.509 kb on - strandat 5834.720 kb on - strand, within AO356_25805at 5834.858 kb on - strand, within AO356_25805at 5834.915 kb on - strand, within AO356_25805at 5835.133 kb on + strand, within AO356_25805at 5835.179 kb on - strand, within AO356_25805at 5835.271 kb on + strand, within AO356_25805at 5835.272 kb on - strand, within AO356_25805at 5835.379 kb on + strand, within AO356_25805at 5835.397 kb on + strand, within AO356_25805at 5835.398 kb on - strand, within AO356_25805at 5835.398 kb on - strand, within AO356_25805at 5835.398 kb on - strand, within AO356_25805

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,832,903 + AO356_25795 0.68 +1.4
5,833,056 + AO356_25795 0.87 -0.3
5,833,056 + AO356_25795 0.87 +1.0
5,833,158 + -0.7
5,833,762 + -1.3
5,833,991 + AO356_25800 0.15 -1.0
5,833,992 - AO356_25800 0.15 +0.0
5,834,066 + AO356_25800 0.27 -2.4
5,834,261 + AO356_25800 0.60 -0.4
5,834,261 + AO356_25800 0.60 -0.6
5,834,262 - AO356_25800 0.60 -0.5
5,834,262 - AO356_25800 0.60 -0.5
5,834,493 + +0.1
5,834,509 - -0.3
5,834,509 - +1.0
5,834,720 - AO356_25805 0.12 -0.7
5,834,858 - AO356_25805 0.20 -0.3
5,834,915 - AO356_25805 0.24 -0.5
5,835,133 + AO356_25805 0.38 +0.0
5,835,179 - AO356_25805 0.40 +0.3
5,835,271 + AO356_25805 0.46 -0.2
5,835,272 - AO356_25805 0.46 +0.5
5,835,379 + AO356_25805 0.53 +0.4
5,835,397 + AO356_25805 0.54 +0.3
5,835,398 - AO356_25805 0.54 -0.3
5,835,398 - AO356_25805 0.54 -0.1
5,835,398 - AO356_25805 0.54 +0.7

Or see this region's nucleotide sequence