Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25700

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25695 and AO356_25700 are separated by 69 nucleotidesAO356_25700 and AO356_25705 are separated by 253 nucleotides AO356_25695: AO356_25695 - ligand-gated channel, at 5,811,611 to 5,813,734 _25695 AO356_25700: AO356_25700 - hypothetical protein, at 5,813,804 to 5,814,799 _25700 AO356_25705: AO356_25705 - monooxygenase, at 5,815,053 to 5,816,096 _25705 Position (kb) 5813 5814 5815Strain fitness (log2 ratio) -2 -1 0 1at 5812.881 kb on - strand, within AO356_25695at 5813.039 kb on - strand, within AO356_25695at 5813.039 kb on - strand, within AO356_25695at 5813.073 kb on - strand, within AO356_25695at 5813.143 kb on + strand, within AO356_25695at 5813.143 kb on + strand, within AO356_25695at 5813.144 kb on - strand, within AO356_25695at 5813.144 kb on - strand, within AO356_25695at 5813.148 kb on - strand, within AO356_25695at 5813.148 kb on - strand, within AO356_25695at 5813.148 kb on - strand, within AO356_25695at 5813.148 kb on - strand, within AO356_25695at 5813.166 kb on - strand, within AO356_25695at 5813.188 kb on + strand, within AO356_25695at 5813.188 kb on + strand, within AO356_25695at 5813.226 kb on + strand, within AO356_25695at 5813.227 kb on - strand, within AO356_25695at 5813.242 kb on - strand, within AO356_25695at 5813.348 kb on + strand, within AO356_25695at 5813.349 kb on - strand, within AO356_25695at 5813.349 kb on - strand, within AO356_25695at 5813.354 kb on + strand, within AO356_25695at 5813.370 kb on + strand, within AO356_25695at 5813.371 kb on - strand, within AO356_25695at 5813.371 kb on - strand, within AO356_25695at 5813.371 kb on - strand, within AO356_25695at 5813.501 kb on + strand, within AO356_25695at 5813.553 kb on - strandat 5813.553 kb on - strandat 5813.553 kb on - strandat 5813.648 kb on + strandat 5813.732 kb on + strandat 5813.841 kb on + strandat 5813.845 kb on + strandat 5813.845 kb on + strandat 5813.898 kb on + strandat 5813.899 kb on - strandat 5813.901 kb on + strandat 5813.902 kb on - strandat 5813.931 kb on - strand, within AO356_25700at 5813.962 kb on - strand, within AO356_25700at 5813.991 kb on + strand, within AO356_25700at 5813.991 kb on + strand, within AO356_25700at 5813.991 kb on + strand, within AO356_25700at 5813.991 kb on + strand, within AO356_25700at 5813.991 kb on + strand, within AO356_25700at 5813.991 kb on + strand, within AO356_25700at 5813.991 kb on + strand, within AO356_25700at 5813.992 kb on - strand, within AO356_25700at 5813.992 kb on - strand, within AO356_25700at 5813.992 kb on - strand, within AO356_25700at 5813.992 kb on - strand, within AO356_25700at 5814.025 kb on - strand, within AO356_25700at 5814.237 kb on + strand, within AO356_25700at 5814.237 kb on + strand, within AO356_25700at 5814.237 kb on + strand, within AO356_25700at 5814.238 kb on - strand, within AO356_25700at 5814.288 kb on + strand, within AO356_25700at 5814.288 kb on + strand, within AO356_25700at 5814.288 kb on + strand, within AO356_25700at 5814.289 kb on - strand, within AO356_25700at 5814.289 kb on - strand, within AO356_25700at 5814.289 kb on - strand, within AO356_25700at 5814.289 kb on - strand, within AO356_25700at 5814.289 kb on - strand, within AO356_25700at 5814.289 kb on - strand, within AO356_25700at 5814.367 kb on + strand, within AO356_25700at 5814.367 kb on + strand, within AO356_25700at 5814.369 kb on + strand, within AO356_25700at 5814.396 kb on + strand, within AO356_25700at 5814.465 kb on + strand, within AO356_25700at 5814.466 kb on - strand, within AO356_25700at 5814.466 kb on - strand, within AO356_25700at 5814.466 kb on - strand, within AO356_25700at 5814.466 kb on - strand, within AO356_25700at 5814.621 kb on + strand, within AO356_25700at 5814.622 kb on - strand, within AO356_25700at 5814.622 kb on - strand, within AO356_25700at 5814.651 kb on + strand, within AO356_25700at 5814.751 kb on + strandat 5814.752 kb on - strandat 5814.812 kb on + strandat 5814.930 kb on + strandat 5814.931 kb on - strandat 5814.931 kb on - strandat 5814.931 kb on - strandat 5814.986 kb on + strandat 5814.986 kb on + strandat 5814.986 kb on + strandat 5814.986 kb on + strandat 5814.986 kb on + strandat 5814.986 kb on + strandat 5814.987 kb on - strandat 5814.987 kb on - strandat 5815.082 kb on + strandat 5815.168 kb on + strand, within AO356_25705at 5815.521 kb on + strand, within AO356_25705at 5815.522 kb on - strand, within AO356_25705

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,812,881 - AO356_25695 0.60 +0.6
5,813,039 - AO356_25695 0.67 -0.1
5,813,039 - AO356_25695 0.67 -0.1
5,813,073 - AO356_25695 0.69 +0.2
5,813,143 + AO356_25695 0.72 +0.3
5,813,143 + AO356_25695 0.72 -0.1
5,813,144 - AO356_25695 0.72 -1.3
5,813,144 - AO356_25695 0.72 +1.1
5,813,148 - AO356_25695 0.72 -0.7
5,813,148 - AO356_25695 0.72 +0.3
5,813,148 - AO356_25695 0.72 +0.8
5,813,148 - AO356_25695 0.72 +1.1
5,813,166 - AO356_25695 0.73 -0.0
5,813,188 + AO356_25695 0.74 -0.0
5,813,188 + AO356_25695 0.74 -0.2
5,813,226 + AO356_25695 0.76 -0.4
5,813,227 - AO356_25695 0.76 -1.0
5,813,242 - AO356_25695 0.77 -0.9
5,813,348 + AO356_25695 0.82 -1.5
5,813,349 - AO356_25695 0.82 -1.2
5,813,349 - AO356_25695 0.82 +0.1
5,813,354 + AO356_25695 0.82 +1.2
5,813,370 + AO356_25695 0.83 -0.3
5,813,371 - AO356_25695 0.83 -0.0
5,813,371 - AO356_25695 0.83 -1.1
5,813,371 - AO356_25695 0.83 -0.6
5,813,501 + AO356_25695 0.89 +0.5
5,813,553 - +0.6
5,813,553 - +0.3
5,813,553 - +0.9
5,813,648 + +0.7
5,813,732 + +0.8
5,813,841 + +0.0
5,813,845 + -0.2
5,813,845 + -1.0
5,813,898 + -0.4
5,813,899 - +0.5
5,813,901 + -0.7
5,813,902 - +0.5
5,813,931 - AO356_25700 0.13 +0.6
5,813,962 - AO356_25700 0.16 -0.2
5,813,991 + AO356_25700 0.19 -1.2
5,813,991 + AO356_25700 0.19 -0.5
5,813,991 + AO356_25700 0.19 -0.5
5,813,991 + AO356_25700 0.19 +0.8
5,813,991 + AO356_25700 0.19 -1.6
5,813,991 + AO356_25700 0.19 +1.0
5,813,991 + AO356_25700 0.19 -0.7
5,813,992 - AO356_25700 0.19 -0.3
5,813,992 - AO356_25700 0.19 +0.1
5,813,992 - AO356_25700 0.19 -0.5
5,813,992 - AO356_25700 0.19 +0.8
5,814,025 - AO356_25700 0.22 +0.5
5,814,237 + AO356_25700 0.43 -0.9
5,814,237 + AO356_25700 0.43 +0.2
5,814,237 + AO356_25700 0.43 +0.1
5,814,238 - AO356_25700 0.44 +0.3
5,814,288 + AO356_25700 0.49 +0.3
5,814,288 + AO356_25700 0.49 -1.2
5,814,288 + AO356_25700 0.49 -0.9
5,814,289 - AO356_25700 0.49 +0.2
5,814,289 - AO356_25700 0.49 +0.5
5,814,289 - AO356_25700 0.49 -1.3
5,814,289 - AO356_25700 0.49 +0.3
5,814,289 - AO356_25700 0.49 +0.9
5,814,289 - AO356_25700 0.49 -0.6
5,814,367 + AO356_25700 0.57 +0.8
5,814,367 + AO356_25700 0.57 +1.0
5,814,369 + AO356_25700 0.57 -1.9
5,814,396 + AO356_25700 0.59 -1.7
5,814,465 + AO356_25700 0.66 +0.3
5,814,466 - AO356_25700 0.66 -0.4
5,814,466 - AO356_25700 0.66 -0.2
5,814,466 - AO356_25700 0.66 -0.0
5,814,466 - AO356_25700 0.66 -0.2
5,814,621 + AO356_25700 0.82 +0.0
5,814,622 - AO356_25700 0.82 -0.0
5,814,622 - AO356_25700 0.82 -0.8
5,814,651 + AO356_25700 0.85 +0.6
5,814,751 + +0.3
5,814,752 - +0.3
5,814,812 + +0.7
5,814,930 + -0.0
5,814,931 - +1.0
5,814,931 - +0.8
5,814,931 - +0.3
5,814,986 + -0.5
5,814,986 + -0.2
5,814,986 + -0.5
5,814,986 + -0.1
5,814,986 + +0.3
5,814,986 + -0.0
5,814,987 - +1.0
5,814,987 - +1.1
5,815,082 + +0.1
5,815,168 + AO356_25705 0.11 -1.0
5,815,521 + AO356_25705 0.45 +0.1
5,815,522 - AO356_25705 0.45 -0.1

Or see this region's nucleotide sequence