Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23755

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23745 and AO356_23750 overlap by 1 nucleotidesAO356_23750 and AO356_23755 are separated by 3 nucleotidesAO356_23755 and AO356_23760 are separated by 110 nucleotidesAO356_23760 and AO356_23765 are separated by 221 nucleotidesAO356_23765 and AO356_23770 overlap by 2 nucleotides AO356_23745: AO356_23745 - LysR family transcriptional regulator, at 5,331,066 to 5,331,986 _23745 AO356_23750: AO356_23750 - LysR family transcriptional regulator, at 5,331,986 to 5,332,897 _23750 AO356_23755: AO356_23755 - AraC family transcriptional regulator, at 5,332,901 to 5,333,824 _23755 AO356_23760: AO356_23760 - hypothetical protein, at 5,333,935 to 5,334,282 _23760 AO356_23765: AO356_23765 - hypothetical protein, at 5,334,504 to 5,334,692 _23765 AO356_23770: AO356_23770 - hypothetical protein, at 5,334,691 to 5,334,915 _23770 Position (kb) 5332 5333 5334Strain fitness (log2 ratio) -2 -1 0 1at 5331.911 kb on + strandat 5331.912 kb on - strandat 5331.912 kb on - strandat 5331.912 kb on - strandat 5331.970 kb on + strandat 5332.012 kb on - strandat 5332.298 kb on + strand, within AO356_23750at 5332.299 kb on - strand, within AO356_23750at 5332.299 kb on - strand, within AO356_23750at 5332.326 kb on - strand, within AO356_23750at 5332.326 kb on - strand, within AO356_23750at 5332.428 kb on + strand, within AO356_23750at 5332.429 kb on - strand, within AO356_23750at 5332.497 kb on - strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.508 kb on + strand, within AO356_23750at 5332.509 kb on - strand, within AO356_23750at 5332.509 kb on - strand, within AO356_23750at 5332.509 kb on - strand, within AO356_23750at 5332.709 kb on + strand, within AO356_23750at 5332.709 kb on + strand, within AO356_23750at 5332.718 kb on + strand, within AO356_23750at 5332.719 kb on - strand, within AO356_23750at 5332.719 kb on - strand, within AO356_23750at 5332.719 kb on - strand, within AO356_23750at 5332.719 kb on - strand, within AO356_23750at 5332.724 kb on + strand, within AO356_23750at 5332.725 kb on - strand, within AO356_23750at 5332.725 kb on - strand, within AO356_23750at 5332.763 kb on + strand, within AO356_23750at 5332.764 kb on - strand, within AO356_23750at 5332.797 kb on - strand, within AO356_23750at 5332.797 kb on - strand, within AO356_23750at 5332.844 kb on + strandat 5332.844 kb on + strandat 5332.844 kb on + strandat 5332.844 kb on + strandat 5332.845 kb on - strandat 5332.845 kb on - strandat 5332.888 kb on + strandat 5332.889 kb on - strandat 5332.956 kb on + strandat 5333.010 kb on - strand, within AO356_23755at 5333.010 kb on - strand, within AO356_23755at 5333.434 kb on - strand, within AO356_23755at 5333.434 kb on - strand, within AO356_23755at 5333.704 kb on - strand, within AO356_23755at 5333.906 kb on + strandat 5333.907 kb on - strandat 5333.928 kb on + strandat 5333.928 kb on + strandat 5333.928 kb on + strandat 5333.943 kb on + strandat 5333.943 kb on + strandat 5333.944 kb on - strandat 5334.022 kb on + strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.023 kb on - strand, within AO356_23760at 5334.025 kb on - strand, within AO356_23760at 5334.227 kb on - strand, within AO356_23760at 5334.227 kb on - strand, within AO356_23760at 5334.227 kb on - strand, within AO356_23760at 5334.232 kb on + strand, within AO356_23760at 5334.232 kb on + strand, within AO356_23760at 5334.339 kb on - strandat 5334.398 kb on + strandat 5334.417 kb on + strandat 5334.505 kb on + strandat 5334.505 kb on + strandat 5334.505 kb on + strandat 5334.505 kb on + strandat 5334.506 kb on - strandat 5334.754 kb on + strand, within AO356_23770at 5334.755 kb on - strand, within AO356_23770

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,331,911 + +0.1
5,331,912 - -0.0
5,331,912 - -0.3
5,331,912 - +0.5
5,331,970 + +0.3
5,332,012 - +0.3
5,332,298 + AO356_23750 0.34 -0.3
5,332,299 - AO356_23750 0.34 -0.7
5,332,299 - AO356_23750 0.34 +0.2
5,332,326 - AO356_23750 0.37 +0.7
5,332,326 - AO356_23750 0.37 -1.0
5,332,428 + AO356_23750 0.48 -0.0
5,332,429 - AO356_23750 0.49 -0.3
5,332,497 - AO356_23750 0.56 +0.3
5,332,508 + AO356_23750 0.57 -0.8
5,332,508 + AO356_23750 0.57 -0.4
5,332,508 + AO356_23750 0.57 +1.5
5,332,508 + AO356_23750 0.57 +0.5
5,332,508 + AO356_23750 0.57 +0.2
5,332,509 - AO356_23750 0.57 +0.3
5,332,509 - AO356_23750 0.57 +0.4
5,332,509 - AO356_23750 0.57 -0.2
5,332,709 + AO356_23750 0.79 +0.9
5,332,709 + AO356_23750 0.79 -0.4
5,332,718 + AO356_23750 0.80 +0.4
5,332,719 - AO356_23750 0.80 +0.3
5,332,719 - AO356_23750 0.80 +0.6
5,332,719 - AO356_23750 0.80 -0.7
5,332,719 - AO356_23750 0.80 -0.3
5,332,724 + AO356_23750 0.81 -0.6
5,332,725 - AO356_23750 0.81 +0.5
5,332,725 - AO356_23750 0.81 +0.3
5,332,763 + AO356_23750 0.85 -0.1
5,332,764 - AO356_23750 0.85 -1.3
5,332,797 - AO356_23750 0.89 +0.4
5,332,797 - AO356_23750 0.89 -0.0
5,332,844 + -2.1
5,332,844 + +0.2
5,332,844 + +0.5
5,332,844 + +0.6
5,332,845 - +0.1
5,332,845 - -0.5
5,332,888 + -0.2
5,332,889 - +0.6
5,332,956 + +0.8
5,333,010 - AO356_23755 0.12 +0.1
5,333,010 - AO356_23755 0.12 -0.6
5,333,434 - AO356_23755 0.58 -0.7
5,333,434 - AO356_23755 0.58 -0.0
5,333,704 - AO356_23755 0.87 -1.3
5,333,906 + -0.7
5,333,907 - +0.3
5,333,928 + -0.2
5,333,928 + +0.3
5,333,928 + -0.2
5,333,943 + +0.1
5,333,943 + -1.6
5,333,944 - +0.5
5,334,022 + AO356_23760 0.25 -1.3
5,334,023 - AO356_23760 0.25 -0.2
5,334,023 - AO356_23760 0.25 -0.2
5,334,023 - AO356_23760 0.25 -0.1
5,334,023 - AO356_23760 0.25 -0.5
5,334,023 - AO356_23760 0.25 -0.7
5,334,025 - AO356_23760 0.26 +1.0
5,334,227 - AO356_23760 0.84 -1.8
5,334,227 - AO356_23760 0.84 -0.6
5,334,227 - AO356_23760 0.84 -0.2
5,334,232 + AO356_23760 0.85 +0.2
5,334,232 + AO356_23760 0.85 +0.2
5,334,339 - +0.5
5,334,398 + +0.9
5,334,417 + +0.5
5,334,505 + +0.5
5,334,505 + +1.1
5,334,505 + -0.2
5,334,505 + -0.8
5,334,506 - +0.1
5,334,754 + AO356_23770 0.28 -0.1
5,334,755 - AO356_23770 0.28 -0.1

Or see this region's nucleotide sequence