Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23645

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23635 and AO356_23640 overlap by 4 nucleotidesAO356_23640 and AO356_23645 are separated by 38 nucleotidesAO356_23645 and AO356_23650 overlap by 4 nucleotidesAO356_23650 and AO356_23655 overlap by 4 nucleotides AO356_23635: AO356_23635 - AP endonuclease, at 5,306,107 to 5,307,336 _23635 AO356_23640: AO356_23640 - hydrolase TatD, at 5,307,333 to 5,308,217 _23640 AO356_23645: AO356_23645 - hypothetical protein, at 5,308,256 to 5,309,029 _23645 AO356_23650: AO356_23650 - prenyltransferase, at 5,309,026 to 5,309,916 _23650 AO356_23655: AO356_23655 - 3-dehydroquinate synthase, at 5,309,913 to 5,311,787 _23655 Position (kb) 5308 5309 5310Strain fitness (log2 ratio) -1 0 1at 5307.649 kb on + strand, within AO356_23640at 5307.649 kb on + strand, within AO356_23640at 5308.069 kb on + strand, within AO356_23640at 5308.208 kb on - strandat 5308.488 kb on - strand, within AO356_23645at 5308.546 kb on - strand, within AO356_23645at 5309.083 kb on + strandat 5309.083 kb on + strandat 5309.083 kb on + strandat 5309.083 kb on + strandat 5309.084 kb on - strandat 5309.084 kb on - strandat 5309.084 kb on - strandat 5309.084 kb on - strandat 5309.084 kb on - strandat 5309.210 kb on + strand, within AO356_23650at 5309.210 kb on + strand, within AO356_23650at 5309.237 kb on - strand, within AO356_23650at 5309.274 kb on - strand, within AO356_23650at 5309.357 kb on + strand, within AO356_23650at 5309.357 kb on + strand, within AO356_23650at 5309.358 kb on - strand, within AO356_23650at 5309.375 kb on + strand, within AO356_23650at 5309.376 kb on - strand, within AO356_23650at 5309.376 kb on - strand, within AO356_23650at 5309.448 kb on - strand, within AO356_23650at 5309.492 kb on + strand, within AO356_23650at 5309.617 kb on + strand, within AO356_23650

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,307,649 + AO356_23640 0.36 -0.1
5,307,649 + AO356_23640 0.36 +0.2
5,308,069 + AO356_23640 0.83 +0.2
5,308,208 - -0.3
5,308,488 - AO356_23645 0.30 +0.7
5,308,546 - AO356_23645 0.37 +0.9
5,309,083 + +0.8
5,309,083 + -0.6
5,309,083 + +0.8
5,309,083 + +0.4
5,309,084 - +0.5
5,309,084 - +0.5
5,309,084 - -0.3
5,309,084 - +0.3
5,309,084 - -0.8
5,309,210 + AO356_23650 0.21 -0.3
5,309,210 + AO356_23650 0.21 +0.3
5,309,237 - AO356_23650 0.24 +0.7
5,309,274 - AO356_23650 0.28 +0.4
5,309,357 + AO356_23650 0.37 -0.6
5,309,357 + AO356_23650 0.37 -0.3
5,309,358 - AO356_23650 0.37 +0.8
5,309,375 + AO356_23650 0.39 +0.2
5,309,376 - AO356_23650 0.39 +0.3
5,309,376 - AO356_23650 0.39 +0.5
5,309,448 - AO356_23650 0.47 +0.5
5,309,492 + AO356_23650 0.52 -0.5
5,309,617 + AO356_23650 0.66 +0.6

Or see this region's nucleotide sequence