Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23290

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23285 and AO356_23290 are separated by 12 nucleotidesAO356_23290 and AO356_23295 are separated by 17 nucleotides AO356_23285: AO356_23285 - hypothetical protein, at 5,210,324 to 5,211,328 _23285 AO356_23290: AO356_23290 - Cro/Cl family transcriptional regulator, at 5,211,341 to 5,211,904 _23290 AO356_23295: AO356_23295 - pyridine nucleotide-disulfide oxidoreductase, at 5,211,922 to 5,213,361 _23295 Position (kb) 5211 5212Strain fitness (log2 ratio) -2 -1 0 1 2at 5210.497 kb on - strand, within AO356_23285at 5210.497 kb on - strand, within AO356_23285at 5210.497 kb on - strand, within AO356_23285at 5210.716 kb on - strand, within AO356_23285at 5210.919 kb on + strand, within AO356_23285at 5210.919 kb on + strand, within AO356_23285at 5210.919 kb on + strand, within AO356_23285at 5210.920 kb on - strand, within AO356_23285at 5210.920 kb on - strand, within AO356_23285at 5211.308 kb on + strandat 5211.309 kb on - strandat 5211.309 kb on - strandat 5211.309 kb on - strandat 5211.309 kb on - strandat 5211.309 kb on - strandat 5211.310 kb on + strandat 5211.310 kb on + strandat 5211.337 kb on + strandat 5211.339 kb on + strandat 5211.340 kb on - strandat 5211.639 kb on + strand, within AO356_23290at 5211.752 kb on + strand, within AO356_23290at 5211.752 kb on + strand, within AO356_23290at 5211.752 kb on + strand, within AO356_23290at 5211.752 kb on + strand, within AO356_23290at 5211.752 kb on + strand, within AO356_23290at 5211.753 kb on - strand, within AO356_23290at 5211.753 kb on - strand, within AO356_23290at 5211.753 kb on - strand, within AO356_23290at 5211.753 kb on - strand, within AO356_23290at 5211.885 kb on + strandat 5211.886 kb on - strandat 5212.093 kb on + strand, within AO356_23295at 5212.279 kb on + strand, within AO356_23295at 5212.279 kb on + strand, within AO356_23295at 5212.279 kb on + strand, within AO356_23295at 5212.279 kb on + strand, within AO356_23295at 5212.280 kb on - strand, within AO356_23295at 5212.280 kb on - strand, within AO356_23295at 5212.280 kb on - strand, within AO356_23295at 5212.280 kb on - strand, within AO356_23295at 5212.280 kb on - strand, within AO356_23295at 5212.396 kb on - strand, within AO356_23295

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,210,497 - AO356_23285 0.17 -0.0
5,210,497 - AO356_23285 0.17 +0.4
5,210,497 - AO356_23285 0.17 -0.2
5,210,716 - AO356_23285 0.39 -1.3
5,210,919 + AO356_23285 0.59 -0.9
5,210,919 + AO356_23285 0.59 +0.4
5,210,919 + AO356_23285 0.59 -0.8
5,210,920 - AO356_23285 0.59 +0.2
5,210,920 - AO356_23285 0.59 +0.5
5,211,308 + -1.1
5,211,309 - -0.4
5,211,309 - -0.4
5,211,309 - +0.1
5,211,309 - +0.5
5,211,309 - -0.2
5,211,310 + +1.2
5,211,310 + -1.5
5,211,337 + +0.9
5,211,339 + +0.5
5,211,340 - +0.5
5,211,639 + AO356_23290 0.53 +1.1
5,211,752 + AO356_23290 0.73 +1.1
5,211,752 + AO356_23290 0.73 +1.3
5,211,752 + AO356_23290 0.73 +1.1
5,211,752 + AO356_23290 0.73 +1.4
5,211,752 + AO356_23290 0.73 +1.4
5,211,753 - AO356_23290 0.73 +0.8
5,211,753 - AO356_23290 0.73 +0.8
5,211,753 - AO356_23290 0.73 +1.5
5,211,753 - AO356_23290 0.73 +0.9
5,211,885 + +1.1
5,211,886 - +1.8
5,212,093 + AO356_23295 0.12 -1.4
5,212,279 + AO356_23295 0.25 +0.1
5,212,279 + AO356_23295 0.25 -0.2
5,212,279 + AO356_23295 0.25 -2.0
5,212,279 + AO356_23295 0.25 -1.2
5,212,280 - AO356_23295 0.25 +1.3
5,212,280 - AO356_23295 0.25 -0.8
5,212,280 - AO356_23295 0.25 +1.4
5,212,280 - AO356_23295 0.25 -0.4
5,212,280 - AO356_23295 0.25 +1.8
5,212,396 - AO356_23295 0.33 -0.0

Or see this region's nucleotide sequence