Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22845

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22840 and AO356_22845 are separated by 250 nucleotidesAO356_22845 and AO356_22850 are separated by 176 nucleotides AO356_22840: AO356_22840 - multidrug transporter, at 5,096,659 to 5,097,603 _22840 AO356_22845: AO356_22845 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data), at 5,097,854 to 5,098,930 _22845 AO356_22850: AO356_22850 - chemotaxis protein, at 5,099,107 to 5,099,991 _22850 Position (kb) 5097 5098 5099Strain fitness (log2 ratio) -2 -1 0 1at 5096.947 kb on + strand, within AO356_22840at 5096.947 kb on + strand, within AO356_22840at 5096.948 kb on - strand, within AO356_22840at 5096.948 kb on - strand, within AO356_22840at 5096.948 kb on - strand, within AO356_22840at 5096.948 kb on - strand, within AO356_22840at 5096.948 kb on - strand, within AO356_22840at 5096.959 kb on + strand, within AO356_22840at 5096.959 kb on + strand, within AO356_22840at 5096.960 kb on - strand, within AO356_22840at 5096.960 kb on - strand, within AO356_22840at 5096.960 kb on - strand, within AO356_22840at 5096.960 kb on - strand, within AO356_22840at 5096.960 kb on - strand, within AO356_22840at 5096.960 kb on - strand, within AO356_22840at 5096.960 kb on - strand, within AO356_22840at 5096.960 kb on - strand, within AO356_22840at 5097.128 kb on + strand, within AO356_22840at 5097.128 kb on + strand, within AO356_22840at 5097.128 kb on + strand, within AO356_22840at 5097.128 kb on + strand, within AO356_22840at 5097.128 kb on + strand, within AO356_22840at 5097.129 kb on - strand, within AO356_22840at 5097.129 kb on - strand, within AO356_22840at 5097.129 kb on - strand, within AO356_22840at 5097.129 kb on - strand, within AO356_22840at 5097.196 kb on + strand, within AO356_22840at 5097.196 kb on + strand, within AO356_22840at 5097.196 kb on + strand, within AO356_22840at 5097.196 kb on + strand, within AO356_22840at 5097.197 kb on - strand, within AO356_22840at 5097.364 kb on + strand, within AO356_22840at 5097.364 kb on + strand, within AO356_22840at 5097.364 kb on + strand, within AO356_22840at 5097.394 kb on + strand, within AO356_22840at 5097.394 kb on + strand, within AO356_22840at 5097.395 kb on - strand, within AO356_22840at 5097.395 kb on - strand, within AO356_22840at 5097.395 kb on - strand, within AO356_22840at 5097.395 kb on - strand, within AO356_22840at 5097.446 kb on + strand, within AO356_22840at 5097.447 kb on - strand, within AO356_22840at 5097.553 kb on - strandat 5097.637 kb on - strandat 5097.647 kb on + strandat 5097.656 kb on - strandat 5097.718 kb on + strandat 5097.718 kb on + strandat 5097.719 kb on - strandat 5097.719 kb on - strandat 5097.719 kb on - strandat 5097.719 kb on - strandat 5097.719 kb on - strandat 5097.719 kb on - strandat 5097.719 kb on - strandat 5097.738 kb on + strandat 5097.738 kb on + strandat 5097.739 kb on - strandat 5097.739 kb on - strandat 5097.739 kb on - strandat 5097.827 kb on - strandat 5097.864 kb on + strandat 5097.864 kb on + strandat 5097.864 kb on + strandat 5097.864 kb on + strandat 5097.865 kb on - strandat 5097.867 kb on - strandat 5098.058 kb on + strand, within AO356_22845at 5098.059 kb on - strand, within AO356_22845at 5098.059 kb on - strand, within AO356_22845at 5098.128 kb on - strand, within AO356_22845at 5098.229 kb on + strand, within AO356_22845at 5098.230 kb on - strand, within AO356_22845at 5098.265 kb on + strand, within AO356_22845at 5098.265 kb on + strand, within AO356_22845at 5098.265 kb on + strand, within AO356_22845at 5098.356 kb on - strand, within AO356_22845at 5098.373 kb on + strand, within AO356_22845at 5098.388 kb on + strand, within AO356_22845at 5098.421 kb on + strand, within AO356_22845at 5098.443 kb on - strand, within AO356_22845at 5098.664 kb on + strand, within AO356_22845at 5098.664 kb on + strand, within AO356_22845at 5098.664 kb on + strand, within AO356_22845at 5098.665 kb on - strand, within AO356_22845at 5098.665 kb on - strand, within AO356_22845at 5098.667 kb on + strand, within AO356_22845at 5098.667 kb on + strand, within AO356_22845at 5098.765 kb on + strand, within AO356_22845at 5098.766 kb on - strand, within AO356_22845at 5098.766 kb on - strand, within AO356_22845at 5098.929 kb on - strandat 5099.042 kb on + strandat 5099.186 kb on + strandat 5099.186 kb on + strandat 5099.186 kb on + strandat 5099.186 kb on + strandat 5099.187 kb on - strandat 5099.187 kb on - strandat 5099.187 kb on - strandat 5099.187 kb on - strandat 5099.187 kb on - strandat 5099.187 kb on - strandat 5099.261 kb on + strand, within AO356_22850at 5099.262 kb on - strand, within AO356_22850at 5099.310 kb on + strand, within AO356_22850at 5099.310 kb on + strand, within AO356_22850at 5099.311 kb on - strand, within AO356_22850at 5099.311 kb on - strand, within AO356_22850at 5099.311 kb on - strand, within AO356_22850at 5099.311 kb on - strand, within AO356_22850at 5099.312 kb on + strand, within AO356_22850at 5099.312 kb on + strand, within AO356_22850at 5099.312 kb on + strand, within AO356_22850at 5099.312 kb on + strand, within AO356_22850at 5099.313 kb on - strand, within AO356_22850at 5099.313 kb on - strand, within AO356_22850at 5099.313 kb on - strand, within AO356_22850at 5099.313 kb on - strand, within AO356_22850at 5099.313 kb on - strand, within AO356_22850at 5099.313 kb on - strand, within AO356_22850at 5099.313 kb on - strand, within AO356_22850at 5099.313 kb on - strand, within AO356_22850at 5099.313 kb on - strand, within AO356_22850at 5099.504 kb on + strand, within AO356_22850at 5099.504 kb on + strand, within AO356_22850at 5099.505 kb on - strand, within AO356_22850at 5099.505 kb on - strand, within AO356_22850at 5099.505 kb on - strand, within AO356_22850at 5099.616 kb on - strand, within AO356_22850at 5099.634 kb on - strand, within AO356_22850at 5099.678 kb on + strand, within AO356_22850at 5099.679 kb on - strand, within AO356_22850at 5099.930 kb on + strandat 5099.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,096,947 + AO356_22840 0.30 +0.8
5,096,947 + AO356_22840 0.30 +0.2
5,096,948 - AO356_22840 0.31 +1.5
5,096,948 - AO356_22840 0.31 +0.7
5,096,948 - AO356_22840 0.31 +1.0
5,096,948 - AO356_22840 0.31 +0.4
5,096,948 - AO356_22840 0.31 +0.4
5,096,959 + AO356_22840 0.32 +0.4
5,096,959 + AO356_22840 0.32 +1.1
5,096,960 - AO356_22840 0.32 -0.5
5,096,960 - AO356_22840 0.32 +0.2
5,096,960 - AO356_22840 0.32 +0.1
5,096,960 - AO356_22840 0.32 +0.5
5,096,960 - AO356_22840 0.32 +0.2
5,096,960 - AO356_22840 0.32 -0.5
5,096,960 - AO356_22840 0.32 +0.5
5,096,960 - AO356_22840 0.32 -0.6
5,097,128 + AO356_22840 0.50 +0.5
5,097,128 + AO356_22840 0.50 +0.1
5,097,128 + AO356_22840 0.50 -0.2
5,097,128 + AO356_22840 0.50 -0.0
5,097,128 + AO356_22840 0.50 -1.1
5,097,129 - AO356_22840 0.50 -0.8
5,097,129 - AO356_22840 0.50 -0.2
5,097,129 - AO356_22840 0.50 +0.4
5,097,129 - AO356_22840 0.50 -0.1
5,097,196 + AO356_22840 0.57 -0.8
5,097,196 + AO356_22840 0.57 +0.8
5,097,196 + AO356_22840 0.57 +0.5
5,097,196 + AO356_22840 0.57 +0.2
5,097,197 - AO356_22840 0.57 +0.6
5,097,364 + AO356_22840 0.75 -0.1
5,097,364 + AO356_22840 0.75 +0.0
5,097,364 + AO356_22840 0.75 +0.7
5,097,394 + AO356_22840 0.78 -0.6
5,097,394 + AO356_22840 0.78 +0.3
5,097,395 - AO356_22840 0.78 +1.7
5,097,395 - AO356_22840 0.78 +0.3
5,097,395 - AO356_22840 0.78 +0.3
5,097,395 - AO356_22840 0.78 +0.3
5,097,446 + AO356_22840 0.83 +0.3
5,097,447 - AO356_22840 0.83 -0.9
5,097,553 - +0.2
5,097,637 - -0.3
5,097,647 + +0.5
5,097,656 - +1.1
5,097,718 + -0.7
5,097,718 + +0.2
5,097,719 - +0.4
5,097,719 - +0.4
5,097,719 - +0.2
5,097,719 - +0.8
5,097,719 - +0.8
5,097,719 - +1.3
5,097,719 - +0.3
5,097,738 + +0.6
5,097,738 + +0.9
5,097,739 - -0.7
5,097,739 - -0.0
5,097,739 - +0.0
5,097,827 - +0.1
5,097,864 + -1.9
5,097,864 + -0.2
5,097,864 + +0.4
5,097,864 + -0.9
5,097,865 - -0.9
5,097,867 - +0.3
5,098,058 + AO356_22845 0.19 +1.1
5,098,059 - AO356_22845 0.19 -1.0
5,098,059 - AO356_22845 0.19 +0.7
5,098,128 - AO356_22845 0.25 +1.3
5,098,229 + AO356_22845 0.35 -0.2
5,098,230 - AO356_22845 0.35 -0.3
5,098,265 + AO356_22845 0.38 +0.9
5,098,265 + AO356_22845 0.38 -0.4
5,098,265 + AO356_22845 0.38 -1.2
5,098,356 - AO356_22845 0.47 -0.1
5,098,373 + AO356_22845 0.48 -0.0
5,098,388 + AO356_22845 0.50 -1.0
5,098,421 + AO356_22845 0.53 +0.2
5,098,443 - AO356_22845 0.55 -0.4
5,098,664 + AO356_22845 0.75 -0.6
5,098,664 + AO356_22845 0.75 -1.6
5,098,664 + AO356_22845 0.75 -0.1
5,098,665 - AO356_22845 0.75 +0.2
5,098,665 - AO356_22845 0.75 -0.7
5,098,667 + AO356_22845 0.75 -0.5
5,098,667 + AO356_22845 0.75 +0.1
5,098,765 + AO356_22845 0.85 -0.1
5,098,766 - AO356_22845 0.85 -0.2
5,098,766 - AO356_22845 0.85 +0.2
5,098,929 - -1.2
5,099,042 + +1.1
5,099,186 + -0.7
5,099,186 + -0.9
5,099,186 + -2.2
5,099,186 + -0.6
5,099,187 - -0.9
5,099,187 - -0.6
5,099,187 - -2.2
5,099,187 - -2.0
5,099,187 - +0.5
5,099,187 - +0.4
5,099,261 + AO356_22850 0.17 -0.7
5,099,262 - AO356_22850 0.18 -1.6
5,099,310 + AO356_22850 0.23 +0.0
5,099,310 + AO356_22850 0.23 -1.9
5,099,311 - AO356_22850 0.23 -0.8
5,099,311 - AO356_22850 0.23 -0.9
5,099,311 - AO356_22850 0.23 -0.2
5,099,311 - AO356_22850 0.23 -1.1
5,099,312 + AO356_22850 0.23 -0.9
5,099,312 + AO356_22850 0.23 +0.1
5,099,312 + AO356_22850 0.23 -0.8
5,099,312 + AO356_22850 0.23 -0.2
5,099,313 - AO356_22850 0.23 -0.3
5,099,313 - AO356_22850 0.23 -0.1
5,099,313 - AO356_22850 0.23 -1.0
5,099,313 - AO356_22850 0.23 -0.3
5,099,313 - AO356_22850 0.23 -1.5
5,099,313 - AO356_22850 0.23 -0.6
5,099,313 - AO356_22850 0.23 +0.4
5,099,313 - AO356_22850 0.23 -0.2
5,099,313 - AO356_22850 0.23 +0.4
5,099,504 + AO356_22850 0.45 -0.7
5,099,504 + AO356_22850 0.45 -0.5
5,099,505 - AO356_22850 0.45 -1.3
5,099,505 - AO356_22850 0.45 -0.7
5,099,505 - AO356_22850 0.45 -0.6
5,099,616 - AO356_22850 0.58 -0.2
5,099,634 - AO356_22850 0.60 -0.3
5,099,678 + AO356_22850 0.65 -1.1
5,099,679 - AO356_22850 0.65 +0.3
5,099,930 + -0.8
5,099,930 + -0.8

Or see this region's nucleotide sequence