Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22795

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22780 and AO356_22785 are separated by 30 nucleotidesAO356_22785 and AO356_22790 are separated by 115 nucleotidesAO356_22790 and AO356_22795 are separated by 234 nucleotidesAO356_22795 and AO356_22800 are separated by 305 nucleotides AO356_22780: AO356_22780 - hypothetical protein, at 5,085,555 to 5,085,785 _22780 AO356_22785: AO356_22785 - hypothetical protein, at 5,085,816 to 5,086,097 _22785 AO356_22790: AO356_22790 - hypothetical protein, at 5,086,213 to 5,086,425 _22790 AO356_22795: AO356_22795 - UTP--glucose-1-phosphate uridylyltransferase, at 5,086,660 to 5,087,499 _22795 AO356_22800: AO356_22800 - glutathione reductase, at 5,087,805 to 5,089,160 _22800 Position (kb) 5086 5087 5088Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5085.745 kb on + strand, within AO356_22780at 5085.793 kb on + strandat 5085.802 kb on + strandat 5085.803 kb on - strandat 5085.817 kb on + strandat 5085.817 kb on + strandat 5085.817 kb on + strandat 5085.817 kb on + strandat 5085.818 kb on - strandat 5085.818 kb on - strandat 5085.821 kb on + strandat 5085.821 kb on + strandat 5085.822 kb on - strandat 5085.822 kb on - strandat 5085.961 kb on + strand, within AO356_22785at 5085.961 kb on + strand, within AO356_22785at 5085.961 kb on + strand, within AO356_22785at 5085.961 kb on + strand, within AO356_22785at 5085.961 kb on + strand, within AO356_22785at 5086.030 kb on + strand, within AO356_22785at 5086.030 kb on + strand, within AO356_22785at 5086.138 kb on - strandat 5086.138 kb on - strandat 5086.162 kb on + strandat 5086.162 kb on + strandat 5086.163 kb on - strandat 5086.163 kb on - strandat 5086.163 kb on - strandat 5086.163 kb on - strandat 5086.195 kb on + strandat 5086.195 kb on + strandat 5086.195 kb on + strandat 5086.195 kb on + strandat 5086.195 kb on + strandat 5086.195 kb on + strandat 5086.196 kb on - strandat 5086.196 kb on - strandat 5086.196 kb on - strandat 5086.323 kb on + strand, within AO356_22790at 5086.323 kb on + strand, within AO356_22790at 5086.355 kb on + strand, within AO356_22790at 5086.356 kb on - strand, within AO356_22790at 5086.356 kb on - strand, within AO356_22790at 5086.362 kb on + strand, within AO356_22790at 5086.363 kb on - strand, within AO356_22790at 5086.363 kb on - strand, within AO356_22790at 5086.401 kb on - strand, within AO356_22790at 5086.427 kb on + strandat 5086.428 kb on - strandat 5086.428 kb on - strandat 5086.428 kb on - strandat 5086.428 kb on - strandat 5086.428 kb on - strandat 5086.428 kb on - strandat 5086.428 kb on - strandat 5086.428 kb on - strandat 5086.464 kb on - strandat 5086.464 kb on - strandat 5086.497 kb on + strandat 5086.498 kb on - strandat 5086.541 kb on - strandat 5086.541 kb on - strandat 5086.541 kb on - strandat 5086.562 kb on + strandat 5086.562 kb on + strandat 5086.562 kb on + strandat 5086.595 kb on + strandat 5086.595 kb on + strandat 5086.595 kb on + strandat 5086.595 kb on + strandat 5086.595 kb on + strandat 5086.595 kb on + strandat 5086.595 kb on + strandat 5086.596 kb on - strandat 5086.596 kb on - strandat 5086.616 kb on - strandat 5086.634 kb on + strandat 5086.635 kb on - strandat 5086.657 kb on + strandat 5086.657 kb on + strandat 5086.659 kb on + strandat 5086.659 kb on + strandat 5086.659 kb on + strandat 5086.659 kb on + strandat 5086.659 kb on + strandat 5086.771 kb on + strand, within AO356_22795at 5086.867 kb on + strand, within AO356_22795at 5086.867 kb on + strand, within AO356_22795at 5087.104 kb on + strand, within AO356_22795at 5087.105 kb on - strand, within AO356_22795at 5087.168 kb on - strand, within AO356_22795at 5087.206 kb on + strand, within AO356_22795at 5087.279 kb on - strand, within AO356_22795at 5087.440 kb on + strandat 5087.440 kb on + strandat 5087.477 kb on - strandat 5087.477 kb on - strandat 5087.774 kb on + strandat 5087.774 kb on + strandat 5087.774 kb on + strandat 5087.775 kb on - strandat 5087.775 kb on - strandat 5087.775 kb on - strandat 5087.775 kb on - strandat 5087.799 kb on + strandat 5087.800 kb on - strandat 5087.826 kb on + strandat 5087.826 kb on + strandat 5087.826 kb on + strandat 5087.826 kb on + strandat 5087.826 kb on + strandat 5087.826 kb on + strandat 5087.826 kb on + strandat 5087.827 kb on - strandat 5087.827 kb on - strandat 5087.827 kb on - strandat 5087.827 kb on - strandat 5087.827 kb on - strandat 5087.827 kb on - strandat 5087.827 kb on - strandat 5087.967 kb on + strand, within AO356_22800at 5087.967 kb on + strand, within AO356_22800at 5087.967 kb on + strand, within AO356_22800at 5087.968 kb on - strand, within AO356_22800at 5087.968 kb on - strand, within AO356_22800at 5087.968 kb on - strand, within AO356_22800at 5087.968 kb on - strand, within AO356_22800at 5087.979 kb on + strand, within AO356_22800at 5088.096 kb on + strand, within AO356_22800at 5088.096 kb on + strand, within AO356_22800at 5088.203 kb on + strand, within AO356_22800at 5088.331 kb on - strand, within AO356_22800at 5088.331 kb on - strand, within AO356_22800at 5088.331 kb on - strand, within AO356_22800at 5088.331 kb on - strand, within AO356_22800

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,085,745 + AO356_22780 0.82 +0.1
5,085,793 + -0.1
5,085,802 + +0.7
5,085,803 - -0.7
5,085,817 + -1.5
5,085,817 + -1.5
5,085,817 + +0.4
5,085,817 + +0.0
5,085,818 - -0.6
5,085,818 - +0.8
5,085,821 + +0.5
5,085,821 + +0.1
5,085,822 - -2.6
5,085,822 - -0.8
5,085,961 + AO356_22785 0.51 +0.9
5,085,961 + AO356_22785 0.51 -0.6
5,085,961 + AO356_22785 0.51 -0.1
5,085,961 + AO356_22785 0.51 +0.2
5,085,961 + AO356_22785 0.51 +1.1
5,086,030 + AO356_22785 0.76 -1.1
5,086,030 + AO356_22785 0.76 -0.2
5,086,138 - -0.1
5,086,138 - +1.6
5,086,162 + +0.5
5,086,162 + +0.5
5,086,163 - +0.4
5,086,163 - -0.3
5,086,163 - +0.5
5,086,163 - +0.4
5,086,195 + -0.5
5,086,195 + -0.0
5,086,195 + -0.5
5,086,195 + +0.8
5,086,195 + +0.2
5,086,195 + -1.0
5,086,196 - -0.0
5,086,196 - +0.1
5,086,196 - +0.4
5,086,323 + AO356_22790 0.52 -0.4
5,086,323 + AO356_22790 0.52 +0.2
5,086,355 + AO356_22790 0.67 +0.1
5,086,356 - AO356_22790 0.67 -0.3
5,086,356 - AO356_22790 0.67 -0.5
5,086,362 + AO356_22790 0.70 -0.3
5,086,363 - AO356_22790 0.70 -0.1
5,086,363 - AO356_22790 0.70 -0.4
5,086,401 - AO356_22790 0.88 -0.5
5,086,427 + -0.3
5,086,428 - -0.3
5,086,428 - +0.5
5,086,428 - +0.2
5,086,428 - -0.2
5,086,428 - +0.2
5,086,428 - -0.7
5,086,428 - -0.1
5,086,428 - +0.8
5,086,464 - +1.1
5,086,464 - -1.5
5,086,497 + +0.4
5,086,498 - -0.4
5,086,541 - +0.1
5,086,541 - +0.6
5,086,541 - -0.2
5,086,562 + +0.7
5,086,562 + +0.5
5,086,562 + -0.3
5,086,595 + +0.3
5,086,595 + +0.7
5,086,595 + -0.5
5,086,595 + +1.0
5,086,595 + +0.1
5,086,595 + -0.1
5,086,595 + +0.7
5,086,596 - -0.1
5,086,596 - +1.2
5,086,616 - +0.6
5,086,634 + +0.6
5,086,635 - -3.8
5,086,657 + +0.2
5,086,657 + -0.1
5,086,659 + +0.5
5,086,659 + +0.5
5,086,659 + -0.2
5,086,659 + -0.3
5,086,659 + +0.3
5,086,771 + AO356_22795 0.13 +0.1
5,086,867 + AO356_22795 0.25 +0.1
5,086,867 + AO356_22795 0.25 -1.5
5,087,104 + AO356_22795 0.53 -0.9
5,087,105 - AO356_22795 0.53 -1.7
5,087,168 - AO356_22795 0.60 -0.5
5,087,206 + AO356_22795 0.65 +1.1
5,087,279 - AO356_22795 0.74 -1.7
5,087,440 + -1.2
5,087,440 + -0.5
5,087,477 - +0.2
5,087,477 - -0.1
5,087,774 + -0.5
5,087,774 + +0.7
5,087,774 + -0.6
5,087,775 - +1.3
5,087,775 - +0.1
5,087,775 - +0.6
5,087,775 - +0.2
5,087,799 + +1.2
5,087,800 - +0.7
5,087,826 + -0.2
5,087,826 + +0.7
5,087,826 + -0.0
5,087,826 + -0.5
5,087,826 + +0.1
5,087,826 + -0.6
5,087,826 + -0.5
5,087,827 - -0.1
5,087,827 - +2.1
5,087,827 - -0.3
5,087,827 - -0.2
5,087,827 - +0.2
5,087,827 - +0.5
5,087,827 - +0.3
5,087,967 + AO356_22800 0.12 -0.5
5,087,967 + AO356_22800 0.12 +0.7
5,087,967 + AO356_22800 0.12 +0.1
5,087,968 - AO356_22800 0.12 +0.0
5,087,968 - AO356_22800 0.12 -0.1
5,087,968 - AO356_22800 0.12 +0.0
5,087,968 - AO356_22800 0.12 -1.2
5,087,979 + AO356_22800 0.13 -0.6
5,088,096 + AO356_22800 0.21 +0.1
5,088,096 + AO356_22800 0.21 -0.7
5,088,203 + AO356_22800 0.29 -0.4
5,088,331 - AO356_22800 0.39 -1.6
5,088,331 - AO356_22800 0.39 +0.8
5,088,331 - AO356_22800 0.39 -1.3
5,088,331 - AO356_22800 0.39 -1.1

Or see this region's nucleotide sequence