Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22370

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22365 and AO356_22370 overlap by 8 nucleotidesAO356_22370 and AO356_22375 are separated by 153 nucleotides AO356_22365: AO356_22365 - ABC transporter, at 5,000,568 to 5,001,356 _22365 AO356_22370: AO356_22370 - hypothetical protein, at 5,001,349 to 5,001,585 _22370 AO356_22375: AO356_22375 - Mn2+/Fe2+ transporter, at 5,001,739 to 5,003,040 _22375 Position (kb) 5001 5002Strain fitness (log2 ratio) -1 0 1 2at 5000.567 kb on + strandat 5000.567 kb on + strandat 5000.567 kb on + strandat 5000.568 kb on - strandat 5000.568 kb on - strandat 5000.568 kb on - strandat 5000.620 kb on + strandat 5000.652 kb on - strand, within AO356_22365at 5000.692 kb on - strand, within AO356_22365at 5000.692 kb on - strand, within AO356_22365at 5000.701 kb on - strand, within AO356_22365at 5000.731 kb on + strand, within AO356_22365at 5000.761 kb on - strand, within AO356_22365at 5000.788 kb on - strand, within AO356_22365at 5000.788 kb on - strand, within AO356_22365at 5000.788 kb on - strand, within AO356_22365at 5001.235 kb on - strand, within AO356_22365at 5001.238 kb on - strand, within AO356_22365at 5001.238 kb on - strand, within AO356_22365at 5001.238 kb on - strand, within AO356_22365at 5001.355 kb on - strandat 5001.404 kb on + strand, within AO356_22370at 5001.404 kb on + strand, within AO356_22370at 5001.404 kb on + strand, within AO356_22370at 5001.404 kb on + strand, within AO356_22370at 5001.404 kb on + strand, within AO356_22370at 5001.405 kb on - strand, within AO356_22370at 5001.405 kb on - strand, within AO356_22370at 5001.470 kb on - strand, within AO356_22370at 5001.470 kb on - strand, within AO356_22370at 5001.470 kb on - strand, within AO356_22370at 5001.481 kb on + strand, within AO356_22370at 5001.583 kb on + strandat 5001.605 kb on - strandat 5001.612 kb on + strandat 5001.612 kb on + strandat 5001.613 kb on - strandat 5001.613 kb on - strandat 5001.892 kb on + strand, within AO356_22375at 5001.892 kb on + strand, within AO356_22375at 5001.892 kb on + strand, within AO356_22375at 5001.892 kb on + strand, within AO356_22375at 5001.893 kb on - strand, within AO356_22375at 5001.893 kb on - strand, within AO356_22375at 5001.893 kb on - strand, within AO356_22375at 5001.940 kb on + strand, within AO356_22375at 5001.941 kb on - strand, within AO356_22375at 5002.051 kb on + strand, within AO356_22375at 5002.051 kb on + strand, within AO356_22375at 5002.051 kb on + strand, within AO356_22375at 5002.051 kb on + strand, within AO356_22375at 5002.052 kb on + strand, within AO356_22375at 5002.052 kb on - strand, within AO356_22375at 5002.084 kb on + strand, within AO356_22375at 5002.084 kb on + strand, within AO356_22375at 5002.194 kb on + strand, within AO356_22375at 5002.194 kb on + strand, within AO356_22375at 5002.195 kb on - strand, within AO356_22375at 5002.195 kb on - strand, within AO356_22375at 5002.195 kb on - strand, within AO356_22375at 5002.195 kb on - strand, within AO356_22375at 5002.198 kb on + strand, within AO356_22375at 5002.198 kb on + strand, within AO356_22375at 5002.198 kb on + strand, within AO356_22375at 5002.199 kb on - strand, within AO356_22375at 5002.199 kb on - strand, within AO356_22375at 5002.305 kb on + strand, within AO356_22375at 5002.306 kb on - strand, within AO356_22375at 5002.306 kb on - strand, within AO356_22375at 5002.414 kb on + strand, within AO356_22375at 5002.414 kb on + strand, within AO356_22375at 5002.414 kb on + strand, within AO356_22375at 5002.414 kb on + strand, within AO356_22375at 5002.414 kb on + strand, within AO356_22375at 5002.415 kb on - strand, within AO356_22375at 5002.458 kb on + strand, within AO356_22375at 5002.458 kb on + strand, within AO356_22375at 5002.459 kb on - strand, within AO356_22375at 5002.459 kb on - strand, within AO356_22375at 5002.459 kb on - strand, within AO356_22375

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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5,000,567 + +0.5
5,000,567 + -0.4
5,000,567 + +0.2
5,000,568 - -0.0
5,000,568 - +0.1
5,000,568 - +0.1
5,000,620 + -0.5
5,000,652 - AO356_22365 0.11 -0.6
5,000,692 - AO356_22365 0.16 -0.0
5,000,692 - AO356_22365 0.16 +0.1
5,000,701 - AO356_22365 0.17 -1.7
5,000,731 + AO356_22365 0.21 +0.9
5,000,761 - AO356_22365 0.24 +0.9
5,000,788 - AO356_22365 0.28 +0.4
5,000,788 - AO356_22365 0.28 -0.3
5,000,788 - AO356_22365 0.28 +1.0
5,001,235 - AO356_22365 0.85 +0.2
5,001,238 - AO356_22365 0.85 +0.3
5,001,238 - AO356_22365 0.85 +0.8
5,001,238 - AO356_22365 0.85 +0.1
5,001,355 - -0.3
5,001,404 + AO356_22370 0.23 +1.4
5,001,404 + AO356_22370 0.23 +0.5
5,001,404 + AO356_22370 0.23 -0.5
5,001,404 + AO356_22370 0.23 +1.3
5,001,404 + AO356_22370 0.23 +0.1
5,001,405 - AO356_22370 0.24 -0.3
5,001,405 - AO356_22370 0.24 +0.3
5,001,470 - AO356_22370 0.51 +1.9
5,001,470 - AO356_22370 0.51 +0.2
5,001,470 - AO356_22370 0.51 +0.4
5,001,481 + AO356_22370 0.56 +0.8
5,001,583 + +0.7
5,001,605 - -0.4
5,001,612 + -0.7
5,001,612 + +1.5
5,001,613 - -0.6
5,001,613 - -1.0
5,001,892 + AO356_22375 0.12 -0.0
5,001,892 + AO356_22375 0.12 +0.2
5,001,892 + AO356_22375 0.12 -0.5
5,001,892 + AO356_22375 0.12 +0.2
5,001,893 - AO356_22375 0.12 -1.3
5,001,893 - AO356_22375 0.12 +0.6
5,001,893 - AO356_22375 0.12 -0.5
5,001,940 + AO356_22375 0.15 +0.1
5,001,941 - AO356_22375 0.16 +0.5
5,002,051 + AO356_22375 0.24 -0.5
5,002,051 + AO356_22375 0.24 -0.4
5,002,051 + AO356_22375 0.24 +0.0
5,002,051 + AO356_22375 0.24 -0.2
5,002,052 + AO356_22375 0.24 +0.5
5,002,052 - AO356_22375 0.24 -1.0
5,002,084 + AO356_22375 0.26 +0.3
5,002,084 + AO356_22375 0.26 +0.4
5,002,194 + AO356_22375 0.35 +0.2
5,002,194 + AO356_22375 0.35 +0.3
5,002,195 - AO356_22375 0.35 +0.6
5,002,195 - AO356_22375 0.35 -0.1
5,002,195 - AO356_22375 0.35 +0.2
5,002,195 - AO356_22375 0.35 -0.5
5,002,198 + AO356_22375 0.35 +0.2
5,002,198 + AO356_22375 0.35 +0.4
5,002,198 + AO356_22375 0.35 -0.7
5,002,199 - AO356_22375 0.35 +0.7
5,002,199 - AO356_22375 0.35 +0.5
5,002,305 + AO356_22375 0.43 -0.3
5,002,306 - AO356_22375 0.44 -0.1
5,002,306 - AO356_22375 0.44 -0.3
5,002,414 + AO356_22375 0.52 -0.4
5,002,414 + AO356_22375 0.52 +0.1
5,002,414 + AO356_22375 0.52 +0.8
5,002,414 + AO356_22375 0.52 +0.1
5,002,414 + AO356_22375 0.52 +0.5
5,002,415 - AO356_22375 0.52 +0.7
5,002,458 + AO356_22375 0.55 -0.7
5,002,458 + AO356_22375 0.55 -1.0
5,002,459 - AO356_22375 0.55 +1.1
5,002,459 - AO356_22375 0.55 +1.0
5,002,459 - AO356_22375 0.55 +0.8

Or see this region's nucleotide sequence