Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21170

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21165 and AO356_21170 are separated by 0 nucleotidesAO356_21170 and AO356_21175 are separated by 473 nucleotides AO356_21165: AO356_21165 - macrolide ABC transporter ATP-binding protein, at 4,746,104 to 4,748,074 _21165 AO356_21170: AO356_21170 - hemolysin secretion protein D, at 4,748,075 to 4,749,223 _21170 AO356_21175: AO356_21175 - RNA polymerase subunit sigma, at 4,749,697 to 4,750,179 _21175 Position (kb) 4748 4749 4750Strain fitness (log2 ratio) -2 -1 0 1 2at 4747.104 kb on + strand, within AO356_21165at 4747.104 kb on + strand, within AO356_21165at 4747.104 kb on + strand, within AO356_21165at 4747.104 kb on + strand, within AO356_21165at 4747.104 kb on + strand, within AO356_21165at 4747.105 kb on - strand, within AO356_21165at 4747.731 kb on + strand, within AO356_21165at 4747.731 kb on + strand, within AO356_21165at 4747.731 kb on + strand, within AO356_21165at 4747.731 kb on + strand, within AO356_21165at 4747.732 kb on - strand, within AO356_21165at 4747.732 kb on - strand, within AO356_21165at 4747.732 kb on - strand, within AO356_21165at 4747.786 kb on - strand, within AO356_21165at 4747.982 kb on + strandat 4748.352 kb on + strand, within AO356_21170at 4748.353 kb on - strand, within AO356_21170at 4748.494 kb on - strand, within AO356_21170at 4748.494 kb on - strand, within AO356_21170at 4748.664 kb on + strand, within AO356_21170at 4748.664 kb on + strand, within AO356_21170at 4748.664 kb on + strand, within AO356_21170at 4748.664 kb on + strand, within AO356_21170at 4748.665 kb on - strand, within AO356_21170at 4748.665 kb on - strand, within AO356_21170at 4748.665 kb on - strand, within AO356_21170at 4748.665 kb on - strand, within AO356_21170at 4748.665 kb on - strand, within AO356_21170at 4749.042 kb on + strand, within AO356_21170at 4749.288 kb on + strandat 4749.333 kb on + strandat 4749.333 kb on + strandat 4749.334 kb on - strandat 4749.334 kb on - strandat 4749.593 kb on + strandat 4749.667 kb on + strandat 4749.668 kb on - strandat 4749.709 kb on + strandat 4749.709 kb on + strandat 4749.787 kb on + strand, within AO356_21175at 4749.788 kb on - strand, within AO356_21175at 4749.788 kb on - strand, within AO356_21175at 4749.788 kb on - strand, within AO356_21175

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,747,104 + AO356_21165 0.51 +0.3
4,747,104 + AO356_21165 0.51 -0.2
4,747,104 + AO356_21165 0.51 -1.7
4,747,104 + AO356_21165 0.51 +0.1
4,747,104 + AO356_21165 0.51 +1.4
4,747,105 - AO356_21165 0.51 +1.8
4,747,731 + AO356_21165 0.83 +0.3
4,747,731 + AO356_21165 0.83 -0.1
4,747,731 + AO356_21165 0.83 +0.7
4,747,731 + AO356_21165 0.83 +0.1
4,747,732 - AO356_21165 0.83 +0.0
4,747,732 - AO356_21165 0.83 +0.0
4,747,732 - AO356_21165 0.83 -0.7
4,747,786 - AO356_21165 0.85 +0.1
4,747,982 + -0.0
4,748,352 + AO356_21170 0.24 +1.4
4,748,353 - AO356_21170 0.24 +0.6
4,748,494 - AO356_21170 0.36 -1.0
4,748,494 - AO356_21170 0.36 +0.5
4,748,664 + AO356_21170 0.51 -0.7
4,748,664 + AO356_21170 0.51 -2.0
4,748,664 + AO356_21170 0.51 +0.9
4,748,664 + AO356_21170 0.51 +1.0
4,748,665 - AO356_21170 0.51 +0.3
4,748,665 - AO356_21170 0.51 +1.5
4,748,665 - AO356_21170 0.51 +0.0
4,748,665 - AO356_21170 0.51 +0.5
4,748,665 - AO356_21170 0.51 +0.2
4,749,042 + AO356_21170 0.84 +1.9
4,749,288 + -0.8
4,749,333 + -0.2
4,749,333 + +0.9
4,749,334 - +0.0
4,749,334 - -0.9
4,749,593 + -1.2
4,749,667 + +0.5
4,749,668 - -0.2
4,749,709 + -0.2
4,749,709 + +0.3
4,749,787 + AO356_21175 0.19 +0.6
4,749,788 - AO356_21175 0.19 -0.2
4,749,788 - AO356_21175 0.19 +0.5
4,749,788 - AO356_21175 0.19 +0.5

Or see this region's nucleotide sequence