Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20940

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20930 and AO356_20935 are separated by 96 nucleotidesAO356_20935 and AO356_20940 are separated by 116 nucleotidesAO356_20940 and AO356_20945 are separated by 103 nucleotidesAO356_20945 and AO356_20950 are separated by 159 nucleotides AO356_20930: AO356_20930 - MerR family transcriptional regulator, at 4,661,459 to 4,661,905 _20930 AO356_20935: AO356_20935 - antibiotic biosynthesis monooxygenase, at 4,662,002 to 4,662,367 _20935 AO356_20940: AO356_20940 - hypothetical protein, at 4,662,484 to 4,662,750 _20940 AO356_20945: AO356_20945 - lysine transporter LysE, at 4,662,854 to 4,663,468 _20945 AO356_20950: AO356_20950 - class V aminotransferase, at 4,663,628 to 4,664,794 _20950 Position (kb) 4662 4663Strain fitness (log2 ratio) -2 -1 0 1at 4661.821 kb on - strand, within AO356_20930at 4661.821 kb on - strand, within AO356_20930at 4661.821 kb on - strand, within AO356_20930at 4661.947 kb on + strandat 4661.990 kb on - strandat 4662.145 kb on + strand, within AO356_20935at 4662.182 kb on + strand, within AO356_20935at 4662.182 kb on + strand, within AO356_20935at 4662.182 kb on + strand, within AO356_20935at 4662.366 kb on - strandat 4662.394 kb on + strandat 4662.458 kb on + strandat 4662.492 kb on + strandat 4662.568 kb on + strand, within AO356_20940at 4662.568 kb on + strand, within AO356_20940at 4662.638 kb on - strand, within AO356_20940at 4662.638 kb on - strand, within AO356_20940at 4662.926 kb on - strand, within AO356_20945at 4662.926 kb on - strand, within AO356_20945at 4662.995 kb on - strand, within AO356_20945at 4662.997 kb on + strand, within AO356_20945at 4662.997 kb on + strand, within AO356_20945at 4662.998 kb on - strand, within AO356_20945at 4662.998 kb on - strand, within AO356_20945at 4662.998 kb on - strand, within AO356_20945at 4663.062 kb on - strand, within AO356_20945at 4663.073 kb on + strand, within AO356_20945at 4663.073 kb on + strand, within AO356_20945at 4663.073 kb on + strand, within AO356_20945at 4663.073 kb on + strand, within AO356_20945at 4663.073 kb on + strand, within AO356_20945at 4663.074 kb on - strand, within AO356_20945at 4663.074 kb on - strand, within AO356_20945at 4663.074 kb on - strand, within AO356_20945at 4663.074 kb on - strand, within AO356_20945at 4663.089 kb on - strand, within AO356_20945at 4663.089 kb on - strand, within AO356_20945at 4663.104 kb on - strand, within AO356_20945at 4663.112 kb on + strand, within AO356_20945at 4663.113 kb on - strand, within AO356_20945at 4663.128 kb on + strand, within AO356_20945at 4663.128 kb on + strand, within AO356_20945at 4663.171 kb on + strand, within AO356_20945at 4663.172 kb on - strand, within AO356_20945at 4663.172 kb on - strand, within AO356_20945at 4663.184 kb on + strand, within AO356_20945at 4663.184 kb on + strand, within AO356_20945at 4663.185 kb on - strand, within AO356_20945at 4663.185 kb on - strand, within AO356_20945at 4663.185 kb on - strand, within AO356_20945at 4663.252 kb on + strand, within AO356_20945at 4663.253 kb on - strand, within AO356_20945at 4663.253 kb on - strand, within AO356_20945at 4663.253 kb on - strand, within AO356_20945at 4663.253 kb on - strand, within AO356_20945at 4663.256 kb on + strand, within AO356_20945at 4663.257 kb on - strand, within AO356_20945at 4663.257 kb on - strand, within AO356_20945at 4663.257 kb on - strand, within AO356_20945at 4663.257 kb on - strand, within AO356_20945at 4663.275 kb on - strand, within AO356_20945at 4663.275 kb on - strand, within AO356_20945at 4663.435 kb on + strandat 4663.435 kb on + strandat 4663.435 kb on + strandat 4663.435 kb on + strandat 4663.435 kb on + strandat 4663.435 kb on + strandat 4663.435 kb on + strandat 4663.435 kb on + strandat 4663.435 kb on + strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.436 kb on - strandat 4663.439 kb on + strandat 4663.439 kb on + strandat 4663.440 kb on - strandat 4663.440 kb on - strandat 4663.530 kb on + strandat 4663.567 kb on + strandat 4663.567 kb on + strandat 4663.568 kb on - strandat 4663.568 kb on - strandat 4663.568 kb on - strandat 4663.628 kb on - strandat 4663.628 kb on - strandat 4663.628 kb on - strandat 4663.633 kb on + strandat 4663.634 kb on - strandat 4663.634 kb on - strandat 4663.646 kb on + strandat 4663.646 kb on + strandat 4663.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,661,821 - AO356_20930 0.81 -0.4
4,661,821 - AO356_20930 0.81 -1.0
4,661,821 - AO356_20930 0.81 -0.5
4,661,947 + +0.1
4,661,990 - +0.6
4,662,145 + AO356_20935 0.39 +0.3
4,662,182 + AO356_20935 0.49 -0.0
4,662,182 + AO356_20935 0.49 +0.0
4,662,182 + AO356_20935 0.49 -0.6
4,662,366 - +0.9
4,662,394 + -0.4
4,662,458 + +0.2
4,662,492 + +0.3
4,662,568 + AO356_20940 0.31 -0.4
4,662,568 + AO356_20940 0.31 -0.9
4,662,638 - AO356_20940 0.58 +0.2
4,662,638 - AO356_20940 0.58 -1.1
4,662,926 - AO356_20945 0.12 -0.3
4,662,926 - AO356_20945 0.12 +0.8
4,662,995 - AO356_20945 0.23 +0.0
4,662,997 + AO356_20945 0.23 -1.0
4,662,997 + AO356_20945 0.23 +1.1
4,662,998 - AO356_20945 0.23 +0.9
4,662,998 - AO356_20945 0.23 +0.6
4,662,998 - AO356_20945 0.23 +0.5
4,663,062 - AO356_20945 0.34 -0.3
4,663,073 + AO356_20945 0.36 +0.3
4,663,073 + AO356_20945 0.36 -0.4
4,663,073 + AO356_20945 0.36 -1.2
4,663,073 + AO356_20945 0.36 -0.1
4,663,073 + AO356_20945 0.36 +0.0
4,663,074 - AO356_20945 0.36 -0.6
4,663,074 - AO356_20945 0.36 +0.6
4,663,074 - AO356_20945 0.36 -0.6
4,663,074 - AO356_20945 0.36 +0.2
4,663,089 - AO356_20945 0.38 -0.1
4,663,089 - AO356_20945 0.38 -0.3
4,663,104 - AO356_20945 0.41 -0.5
4,663,112 + AO356_20945 0.42 +0.9
4,663,113 - AO356_20945 0.42 +0.7
4,663,128 + AO356_20945 0.45 -0.5
4,663,128 + AO356_20945 0.45 -0.9
4,663,171 + AO356_20945 0.52 -0.6
4,663,172 - AO356_20945 0.52 -0.9
4,663,172 - AO356_20945 0.52 -0.2
4,663,184 + AO356_20945 0.54 -0.4
4,663,184 + AO356_20945 0.54 -1.9
4,663,185 - AO356_20945 0.54 -1.3
4,663,185 - AO356_20945 0.54 -0.1
4,663,185 - AO356_20945 0.54 -0.7
4,663,252 + AO356_20945 0.65 +0.4
4,663,253 - AO356_20945 0.65 -2.0
4,663,253 - AO356_20945 0.65 -0.8
4,663,253 - AO356_20945 0.65 +0.1
4,663,253 - AO356_20945 0.65 -1.0
4,663,256 + AO356_20945 0.65 -1.0
4,663,257 - AO356_20945 0.66 -1.0
4,663,257 - AO356_20945 0.66 +0.8
4,663,257 - AO356_20945 0.66 -0.0
4,663,257 - AO356_20945 0.66 -0.1
4,663,275 - AO356_20945 0.68 -0.3
4,663,275 - AO356_20945 0.68 +0.5
4,663,435 + -0.2
4,663,435 + +1.3
4,663,435 + -0.4
4,663,435 + +0.1
4,663,435 + +1.0
4,663,435 + -0.1
4,663,435 + -0.3
4,663,435 + +0.8
4,663,435 + +0.6
4,663,436 - -0.5
4,663,436 - -1.1
4,663,436 - +0.3
4,663,436 - -1.8
4,663,436 - -0.2
4,663,436 - +0.0
4,663,436 - +0.7
4,663,436 - -1.1
4,663,436 - +0.1
4,663,436 - -0.1
4,663,436 - -1.7
4,663,436 - -1.4
4,663,436 - -0.6
4,663,439 + +0.0
4,663,439 + -1.0
4,663,440 - +0.2
4,663,440 - -0.0
4,663,530 + +0.9
4,663,567 + +1.1
4,663,567 + +0.8
4,663,568 - +0.9
4,663,568 - +0.1
4,663,568 - -0.3
4,663,628 - +0.2
4,663,628 - +0.9
4,663,628 - -0.5
4,663,633 + -0.8
4,663,634 - -0.3
4,663,634 - -0.8
4,663,646 + -0.0
4,663,646 + -0.7
4,663,647 - -0.7

Or see this region's nucleotide sequence