Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20340

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20330 and AO356_20335 are separated by 9 nucleotidesAO356_20335 and AO356_20340 overlap by 4 nucleotidesAO356_20340 and AO356_20345 are separated by 200 nucleotides AO356_20330: AO356_20330 - ABC transporter substrate-binding protein, at 4,542,972 to 4,543,796 _20330 AO356_20335: AO356_20335 - hypothetical protein, at 4,543,806 to 4,544,165 _20335 AO356_20340: AO356_20340 - hypothetical protein, at 4,544,162 to 4,544,971 _20340 AO356_20345: AO356_20345 - GntR family transcriptional regulator, at 4,545,172 to 4,546,614 _20345 Position (kb) 4544 4545Strain fitness (log2 ratio) -2 -1 0 1 2at 4543.197 kb on + strand, within AO356_20330at 4543.299 kb on + strand, within AO356_20330at 4543.299 kb on + strand, within AO356_20330at 4543.299 kb on + strand, within AO356_20330at 4543.299 kb on + strand, within AO356_20330at 4543.299 kb on + strand, within AO356_20330at 4543.299 kb on + strand, within AO356_20330at 4543.300 kb on - strand, within AO356_20330at 4543.300 kb on - strand, within AO356_20330at 4543.330 kb on - strand, within AO356_20330at 4543.421 kb on + strand, within AO356_20330at 4543.421 kb on + strand, within AO356_20330at 4543.421 kb on + strand, within AO356_20330at 4543.421 kb on + strand, within AO356_20330at 4543.422 kb on - strand, within AO356_20330at 4543.422 kb on - strand, within AO356_20330at 4543.524 kb on + strand, within AO356_20330at 4543.524 kb on + strand, within AO356_20330at 4543.524 kb on + strand, within AO356_20330at 4543.524 kb on + strand, within AO356_20330at 4543.524 kb on + strand, within AO356_20330at 4543.524 kb on + strand, within AO356_20330at 4543.524 kb on + strand, within AO356_20330at 4543.524 kb on + strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.525 kb on - strand, within AO356_20330at 4543.543 kb on - strand, within AO356_20330at 4543.795 kb on - strandat 4543.804 kb on + strandat 4543.812 kb on - strandat 4544.013 kb on + strand, within AO356_20335at 4544.013 kb on + strand, within AO356_20335at 4544.013 kb on + strand, within AO356_20335at 4544.014 kb on - strand, within AO356_20335at 4544.178 kb on + strandat 4544.178 kb on + strandat 4544.179 kb on - strandat 4544.179 kb on - strandat 4544.216 kb on + strandat 4544.216 kb on + strandat 4544.216 kb on + strandat 4544.216 kb on + strandat 4544.216 kb on + strandat 4544.216 kb on + strandat 4544.216 kb on + strandat 4544.216 kb on + strandat 4544.217 kb on - strandat 4544.217 kb on - strandat 4544.217 kb on - strandat 4544.217 kb on - strandat 4544.217 kb on - strandat 4544.217 kb on - strandat 4544.217 kb on - strandat 4544.217 kb on - strandat 4544.217 kb on - strandat 4544.217 kb on - strandat 4544.298 kb on + strand, within AO356_20340at 4544.298 kb on + strand, within AO356_20340at 4544.370 kb on - strand, within AO356_20340at 4544.399 kb on + strand, within AO356_20340at 4544.399 kb on + strand, within AO356_20340at 4544.400 kb on - strand, within AO356_20340at 4544.405 kb on + strand, within AO356_20340at 4544.405 kb on + strand, within AO356_20340at 4544.406 kb on - strand, within AO356_20340at 4544.421 kb on - strand, within AO356_20340at 4544.729 kb on - strand, within AO356_20340at 4544.738 kb on + strand, within AO356_20340at 4544.738 kb on + strand, within AO356_20340at 4544.858 kb on + strand, within AO356_20340at 4544.859 kb on - strand, within AO356_20340at 4545.048 kb on + strandat 4545.049 kb on - strandat 4545.054 kb on + strandat 4545.054 kb on + strandat 4545.054 kb on + strandat 4545.054 kb on + strandat 4545.073 kb on + strandat 4545.073 kb on + strandat 4545.073 kb on + strandat 4545.074 kb on - strandat 4545.074 kb on - strandat 4545.074 kb on - strandat 4545.104 kb on - strandat 4545.142 kb on + strandat 4545.190 kb on + strandat 4545.190 kb on + strandat 4545.190 kb on + strandat 4545.191 kb on - strandat 4545.191 kb on - strandat 4545.198 kb on + strandat 4545.199 kb on - strandat 4545.199 kb on - strandat 4545.199 kb on - strandat 4545.199 kb on - strandat 4545.199 kb on - strandat 4545.238 kb on + strandat 4545.238 kb on + strandat 4545.238 kb on + strandat 4545.238 kb on + strandat 4545.238 kb on + strandat 4545.239 kb on - strandat 4545.319 kb on + strand, within AO356_20345at 4545.319 kb on + strand, within AO356_20345at 4545.320 kb on - strand, within AO356_20345at 4545.373 kb on + strand, within AO356_20345at 4545.373 kb on + strand, within AO356_20345at 4545.373 kb on + strand, within AO356_20345at 4545.373 kb on + strand, within AO356_20345at 4545.373 kb on + strand, within AO356_20345at 4545.373 kb on + strand, within AO356_20345at 4545.373 kb on + strand, within AO356_20345at 4545.373 kb on + strand, within AO356_20345at 4545.374 kb on - strand, within AO356_20345at 4545.374 kb on - strand, within AO356_20345at 4545.374 kb on - strand, within AO356_20345at 4545.374 kb on - strand, within AO356_20345at 4545.532 kb on + strand, within AO356_20345at 4545.604 kb on + strand, within AO356_20345at 4545.604 kb on + strand, within AO356_20345at 4545.604 kb on + strand, within AO356_20345at 4545.604 kb on + strand, within AO356_20345at 4545.604 kb on + strand, within AO356_20345at 4545.605 kb on - strand, within AO356_20345at 4545.605 kb on - strand, within AO356_20345at 4545.605 kb on - strand, within AO356_20345at 4545.605 kb on - strand, within AO356_20345at 4545.605 kb on - strand, within AO356_20345at 4545.605 kb on - strand, within AO356_20345at 4545.784 kb on + strand, within AO356_20345at 4545.784 kb on + strand, within AO356_20345at 4545.784 kb on + strand, within AO356_20345at 4545.784 kb on + strand, within AO356_20345at 4545.785 kb on - strand, within AO356_20345at 4545.785 kb on - strand, within AO356_20345at 4545.915 kb on - strand, within AO356_20345

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,543,197 + AO356_20330 0.27 -0.2
4,543,299 + AO356_20330 0.40 +0.0
4,543,299 + AO356_20330 0.40 -0.7
4,543,299 + AO356_20330 0.40 -0.1
4,543,299 + AO356_20330 0.40 +0.3
4,543,299 + AO356_20330 0.40 -0.1
4,543,299 + AO356_20330 0.40 +0.1
4,543,300 - AO356_20330 0.40 -0.6
4,543,300 - AO356_20330 0.40 -0.5
4,543,330 - AO356_20330 0.43 +0.5
4,543,421 + AO356_20330 0.54 +0.5
4,543,421 + AO356_20330 0.54 -0.0
4,543,421 + AO356_20330 0.54 +1.0
4,543,421 + AO356_20330 0.54 -0.4
4,543,422 - AO356_20330 0.55 +0.1
4,543,422 - AO356_20330 0.55 -0.3
4,543,524 + AO356_20330 0.67 -0.1
4,543,524 + AO356_20330 0.67 -0.3
4,543,524 + AO356_20330 0.67 -1.1
4,543,524 + AO356_20330 0.67 -1.1
4,543,524 + AO356_20330 0.67 +0.9
4,543,524 + AO356_20330 0.67 +1.4
4,543,524 + AO356_20330 0.67 +0.1
4,543,524 + AO356_20330 0.67 -0.2
4,543,525 - AO356_20330 0.67 +0.1
4,543,525 - AO356_20330 0.67 +0.2
4,543,525 - AO356_20330 0.67 +0.7
4,543,525 - AO356_20330 0.67 +0.9
4,543,525 - AO356_20330 0.67 +1.3
4,543,525 - AO356_20330 0.67 -0.4
4,543,525 - AO356_20330 0.67 +0.8
4,543,525 - AO356_20330 0.67 +0.6
4,543,525 - AO356_20330 0.67 +0.1
4,543,525 - AO356_20330 0.67 +0.9
4,543,525 - AO356_20330 0.67 +0.5
4,543,525 - AO356_20330 0.67 +1.6
4,543,525 - AO356_20330 0.67 +0.3
4,543,525 - AO356_20330 0.67 +0.6
4,543,525 - AO356_20330 0.67 -1.4
4,543,543 - AO356_20330 0.69 +0.2
4,543,795 - +0.4
4,543,804 + +0.4
4,543,812 - +0.5
4,544,013 + AO356_20335 0.57 +0.9
4,544,013 + AO356_20335 0.57 +1.5
4,544,013 + AO356_20335 0.57 +1.8
4,544,014 - AO356_20335 0.58 +0.8
4,544,178 + +0.8
4,544,178 + +1.2
4,544,179 - +0.3
4,544,179 - +1.2
4,544,216 + +1.4
4,544,216 + +1.2
4,544,216 + +1.2
4,544,216 + +0.5
4,544,216 + +1.0
4,544,216 + +0.9
4,544,216 + +1.5
4,544,216 + +0.1
4,544,217 - +0.5
4,544,217 - +1.0
4,544,217 - +1.6
4,544,217 - +1.8
4,544,217 - +0.6
4,544,217 - -0.2
4,544,217 - +0.6
4,544,217 - +0.6
4,544,217 - +1.0
4,544,217 - +1.0
4,544,298 + AO356_20340 0.17 -0.0
4,544,298 + AO356_20340 0.17 +1.0
4,544,370 - AO356_20340 0.26 +1.7
4,544,399 + AO356_20340 0.29 +1.2
4,544,399 + AO356_20340 0.29 +0.9
4,544,400 - AO356_20340 0.29 +0.8
4,544,405 + AO356_20340 0.30 +0.3
4,544,405 + AO356_20340 0.30 +0.3
4,544,406 - AO356_20340 0.30 +0.0
4,544,421 - AO356_20340 0.32 -0.7
4,544,729 - AO356_20340 0.70 +0.3
4,544,738 + AO356_20340 0.71 +0.8
4,544,738 + AO356_20340 0.71 +1.6
4,544,858 + AO356_20340 0.86 +0.3
4,544,859 - AO356_20340 0.86 +0.4
4,545,048 + -0.6
4,545,049 - -1.0
4,545,054 + -0.4
4,545,054 + +0.0
4,545,054 + +0.8
4,545,054 + -0.6
4,545,073 + +1.5
4,545,073 + +0.3
4,545,073 + -0.1
4,545,074 - +0.9
4,545,074 - +0.7
4,545,074 - -1.1
4,545,104 - -0.5
4,545,142 + +0.3
4,545,190 + -2.2
4,545,190 + +0.4
4,545,190 + -0.9
4,545,191 - +0.1
4,545,191 - +0.0
4,545,198 + -0.4
4,545,199 - +0.4
4,545,199 - -0.8
4,545,199 - -0.6
4,545,199 - -0.2
4,545,199 - +0.1
4,545,238 + +0.2
4,545,238 + -0.9
4,545,238 + -0.2
4,545,238 + -0.8
4,545,238 + -1.8
4,545,239 - -1.0
4,545,319 + AO356_20345 0.10 -0.6
4,545,319 + AO356_20345 0.10 -2.0
4,545,320 - AO356_20345 0.10 +0.1
4,545,373 + AO356_20345 0.14 +0.0
4,545,373 + AO356_20345 0.14 -0.3
4,545,373 + AO356_20345 0.14 +0.3
4,545,373 + AO356_20345 0.14 -0.5
4,545,373 + AO356_20345 0.14 -0.6
4,545,373 + AO356_20345 0.14 -0.5
4,545,373 + AO356_20345 0.14 -1.3
4,545,373 + AO356_20345 0.14 +0.2
4,545,374 - AO356_20345 0.14 -0.9
4,545,374 - AO356_20345 0.14 -0.8
4,545,374 - AO356_20345 0.14 -0.6
4,545,374 - AO356_20345 0.14 -2.6
4,545,532 + AO356_20345 0.25 +0.4
4,545,604 + AO356_20345 0.30 -1.2
4,545,604 + AO356_20345 0.30 -1.3
4,545,604 + AO356_20345 0.30 +0.7
4,545,604 + AO356_20345 0.30 +0.0
4,545,604 + AO356_20345 0.30 -0.5
4,545,605 - AO356_20345 0.30 -0.1
4,545,605 - AO356_20345 0.30 -1.1
4,545,605 - AO356_20345 0.30 -0.8
4,545,605 - AO356_20345 0.30 -0.4
4,545,605 - AO356_20345 0.30 -0.6
4,545,605 - AO356_20345 0.30 -0.8
4,545,784 + AO356_20345 0.42 -0.7
4,545,784 + AO356_20345 0.42 +1.2
4,545,784 + AO356_20345 0.42 -0.9
4,545,784 + AO356_20345 0.42 -0.4
4,545,785 - AO356_20345 0.42 +0.5
4,545,785 - AO356_20345 0.42 +1.1
4,545,915 - AO356_20345 0.51 -0.0

Or see this region's nucleotide sequence