Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19835

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19830 and AO356_19835 are separated by 95 nucleotidesAO356_19835 and AO356_19840 are separated by 235 nucleotides AO356_19830: AO356_19830 - hypothetical protein, at 4,445,792 to 4,446,829 _19830 AO356_19835: AO356_19835 - histidine kinase, at 4,446,925 to 4,447,764 _19835 AO356_19840: AO356_19840 - histidine kinase, at 4,448,000 to 4,449,043 _19840 Position (kb) 4446 4447 4448Strain fitness (log2 ratio) -2 -1 0 1at 4446.148 kb on - strand, within AO356_19830at 4446.148 kb on - strand, within AO356_19830at 4446.207 kb on - strand, within AO356_19830at 4446.283 kb on + strand, within AO356_19830at 4446.284 kb on - strand, within AO356_19830at 4446.380 kb on + strand, within AO356_19830at 4446.380 kb on + strand, within AO356_19830at 4446.381 kb on - strand, within AO356_19830at 4446.381 kb on - strand, within AO356_19830at 4446.381 kb on - strand, within AO356_19830at 4446.381 kb on - strand, within AO356_19830at 4446.381 kb on - strand, within AO356_19830at 4446.381 kb on - strand, within AO356_19830at 4446.381 kb on - strand, within AO356_19830at 4446.381 kb on - strand, within AO356_19830at 4446.381 kb on - strand, within AO356_19830at 4446.502 kb on - strand, within AO356_19830at 4446.668 kb on + strand, within AO356_19830at 4446.668 kb on + strand, within AO356_19830at 4446.669 kb on - strand, within AO356_19830at 4446.788 kb on + strandat 4446.788 kb on + strandat 4446.837 kb on - strandat 4446.837 kb on - strandat 4446.837 kb on - strandat 4446.878 kb on + strandat 4446.879 kb on - strandat 4447.158 kb on + strand, within AO356_19835at 4447.159 kb on - strand, within AO356_19835at 4447.733 kb on + strandat 4447.733 kb on + strandat 4447.734 kb on - strandat 4447.734 kb on - strandat 4447.734 kb on - strandat 4447.787 kb on + strandat 4447.808 kb on + strandat 4447.809 kb on - strandat 4447.864 kb on + strandat 4447.864 kb on + strandat 4447.864 kb on + strandat 4447.865 kb on - strandat 4447.865 kb on - strandat 4447.865 kb on - strandat 4447.865 kb on - strandat 4447.865 kb on - strandat 4447.922 kb on + strandat 4447.922 kb on + strandat 4447.922 kb on + strandat 4447.923 kb on - strandat 4447.923 kb on - strandat 4448.460 kb on + strand, within AO356_19840at 4448.460 kb on + strand, within AO356_19840at 4448.460 kb on + strand, within AO356_19840at 4448.461 kb on - strand, within AO356_19840at 4448.461 kb on - strand, within AO356_19840at 4448.461 kb on - strand, within AO356_19840at 4448.621 kb on + strand, within AO356_19840at 4448.621 kb on + strand, within AO356_19840at 4448.621 kb on + strand, within AO356_19840at 4448.622 kb on - strand, within AO356_19840at 4448.622 kb on - strand, within AO356_19840at 4448.622 kb on - strand, within AO356_19840at 4448.659 kb on + strand, within AO356_19840at 4448.659 kb on + strand, within AO356_19840at 4448.660 kb on - strand, within AO356_19840at 4448.660 kb on - strand, within AO356_19840at 4448.660 kb on - strand, within AO356_19840

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,446,148 - AO356_19830 0.34 -0.4
4,446,148 - AO356_19830 0.34 -0.4
4,446,207 - AO356_19830 0.40 -0.2
4,446,283 + AO356_19830 0.47 +0.1
4,446,284 - AO356_19830 0.47 +0.7
4,446,380 + AO356_19830 0.57 +0.3
4,446,380 + AO356_19830 0.57 -0.1
4,446,381 - AO356_19830 0.57 +0.0
4,446,381 - AO356_19830 0.57 -0.1
4,446,381 - AO356_19830 0.57 -1.7
4,446,381 - AO356_19830 0.57 +0.4
4,446,381 - AO356_19830 0.57 +0.4
4,446,381 - AO356_19830 0.57 -0.2
4,446,381 - AO356_19830 0.57 +0.6
4,446,381 - AO356_19830 0.57 +1.1
4,446,381 - AO356_19830 0.57 +0.3
4,446,502 - AO356_19830 0.68 -0.2
4,446,668 + AO356_19830 0.84 -0.2
4,446,668 + AO356_19830 0.84 -1.2
4,446,669 - AO356_19830 0.84 -0.1
4,446,788 + -0.3
4,446,788 + -0.3
4,446,837 - +0.8
4,446,837 - -0.6
4,446,837 - -0.1
4,446,878 + -0.8
4,446,879 - -0.8
4,447,158 + AO356_19835 0.28 -0.7
4,447,159 - AO356_19835 0.28 -0.7
4,447,733 + +1.2
4,447,733 + +0.1
4,447,734 - +0.3
4,447,734 - +0.8
4,447,734 - +0.6
4,447,787 + +0.0
4,447,808 + +0.3
4,447,809 - +0.2
4,447,864 + -0.4
4,447,864 + +0.6
4,447,864 + -1.0
4,447,865 - +0.4
4,447,865 - +0.9
4,447,865 - -0.4
4,447,865 - +0.8
4,447,865 - -0.1
4,447,922 + -1.2
4,447,922 + -0.6
4,447,922 + -1.4
4,447,923 - -0.3
4,447,923 - +0.2
4,448,460 + AO356_19840 0.44 -0.1
4,448,460 + AO356_19840 0.44 -0.8
4,448,460 + AO356_19840 0.44 -0.5
4,448,461 - AO356_19840 0.44 -1.4
4,448,461 - AO356_19840 0.44 -0.5
4,448,461 - AO356_19840 0.44 -0.1
4,448,621 + AO356_19840 0.59 -0.8
4,448,621 + AO356_19840 0.59 -0.9
4,448,621 + AO356_19840 0.59 +0.2
4,448,622 - AO356_19840 0.60 -0.4
4,448,622 - AO356_19840 0.60 +0.4
4,448,622 - AO356_19840 0.60 +0.3
4,448,659 + AO356_19840 0.63 -1.2
4,448,659 + AO356_19840 0.63 -0.5
4,448,660 - AO356_19840 0.63 -0.1
4,448,660 - AO356_19840 0.63 -2.7
4,448,660 - AO356_19840 0.63 +0.4

Or see this region's nucleotide sequence