Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19420

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_19415 and AO356_19420 are separated by 201 nucleotidesAO356_19420 and AO356_19425 are separated by 118 nucleotides AO356_19415: AO356_19415 - septum site-determining protein MinD, at 4,356,228 to 4,357,040 _19415 AO356_19420: AO356_19420 - septum formation inhibitor, at 4,357,242 to 4,357,979 _19420 AO356_19425: AO356_19425 - lipid A biosynthesis lauroyl acyltransferase, at 4,358,098 to 4,359,030 _19425 Position (kb) 4357 4358Strain fitness (log2 ratio) -2 -1 0 1at 4357.150 kb on - strandat 4357.150 kb on - strandat 4357.337 kb on - strand, within AO356_19420at 4357.398 kb on - strand, within AO356_19420at 4357.443 kb on + strand, within AO356_19420at 4357.522 kb on + strand, within AO356_19420at 4357.914 kb on - strandat 4357.988 kb on + strandat 4358.021 kb on - strandat 4358.021 kb on - strandat 4358.021 kb on - strandat 4358.021 kb on - strandat 4358.063 kb on + strandat 4358.063 kb on + strandat 4358.063 kb on + strandat 4358.063 kb on + strandat 4358.064 kb on - strandat 4358.085 kb on - strandat 4358.096 kb on + strandat 4358.096 kb on + strandat 4358.551 kb on + strand, within AO356_19425at 4358.552 kb on - strand, within AO356_19425at 4358.707 kb on + strand, within AO356_19425at 4358.960 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
4,357,150 - -0.1
4,357,150 - -0.6
4,357,337 - AO356_19420 0.13 -1.1
4,357,398 - AO356_19420 0.21 -0.3
4,357,443 + AO356_19420 0.27 -1.1
4,357,522 + AO356_19420 0.38 +0.4
4,357,914 - -1.3
4,357,988 + -0.3
4,358,021 - -0.2
4,358,021 - -0.0
4,358,021 - +0.1
4,358,021 - +0.3
4,358,063 + +0.1
4,358,063 + +0.4
4,358,063 + +1.4
4,358,063 + -0.3
4,358,064 - +0.5
4,358,085 - -1.8
4,358,096 + -2.3
4,358,096 + +0.5
4,358,551 + AO356_19425 0.49 +0.2
4,358,552 - AO356_19425 0.49 +1.0
4,358,707 + AO356_19425 0.65 +0.1
4,358,960 - +0.0

Or see this region's nucleotide sequence