Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19310

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19300 and AO356_19305 are separated by 293 nucleotidesAO356_19305 and AO356_19310 are separated by 102 nucleotidesAO356_19310 and AO356_19315 overlap by 4 nucleotidesAO356_19315 and AO356_19320 are separated by 0 nucleotidesAO356_19320 and AO356_19325 are separated by 186 nucleotides AO356_19300: AO356_19300 - peptidylprolyl isomerase, at 4,330,570 to 4,331,283 _19300 AO356_19305: AO356_19305 - hypothetical protein, at 4,331,577 to 4,332,032 _19305 AO356_19310: AO356_19310 - Cro/Cl family transcriptional regulator, at 4,332,135 to 4,332,476 _19310 AO356_19315: AO356_19315 - hypothetical protein, at 4,332,473 to 4,332,844 _19315 AO356_19320: AO356_19320 - hypothetical protein, at 4,332,845 to 4,333,246 _19320 AO356_19325: AO356_19325 - type IV secretion protein Rhs, at 4,333,433 to 4,338,187 _19325 Position (kb) 4332 4333Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4331.146 kb on + strand, within AO356_19300at 4331.146 kb on + strand, within AO356_19300at 4331.146 kb on + strand, within AO356_19300at 4331.146 kb on + strand, within AO356_19300at 4331.147 kb on - strand, within AO356_19300at 4331.147 kb on - strand, within AO356_19300at 4331.147 kb on - strand, within AO356_19300at 4331.155 kb on + strand, within AO356_19300at 4331.155 kb on + strand, within AO356_19300at 4331.155 kb on + strand, within AO356_19300at 4331.155 kb on + strand, within AO356_19300at 4331.155 kb on + strand, within AO356_19300at 4331.155 kb on + strand, within AO356_19300at 4331.155 kb on + strand, within AO356_19300at 4331.156 kb on - strand, within AO356_19300at 4331.156 kb on - strand, within AO356_19300at 4331.156 kb on - strand, within AO356_19300at 4331.156 kb on - strand, within AO356_19300at 4331.177 kb on - strand, within AO356_19300at 4331.281 kb on + strandat 4331.282 kb on - strandat 4331.282 kb on - strandat 4331.282 kb on - strandat 4331.294 kb on + strandat 4331.294 kb on + strandat 4331.294 kb on + strandat 4331.294 kb on + strandat 4331.294 kb on + strandat 4331.295 kb on - strandat 4331.379 kb on + strandat 4331.380 kb on - strandat 4331.380 kb on - strandat 4331.387 kb on + strandat 4331.387 kb on + strandat 4331.388 kb on - strandat 4331.388 kb on - strandat 4331.388 kb on - strandat 4331.394 kb on + strandat 4331.394 kb on + strandat 4331.394 kb on + strandat 4331.395 kb on - strandat 4331.395 kb on - strandat 4331.395 kb on - strandat 4331.439 kb on + strandat 4331.453 kb on - strandat 4331.749 kb on - strand, within AO356_19305at 4331.814 kb on + strand, within AO356_19305at 4331.814 kb on + strand, within AO356_19305at 4331.814 kb on + strand, within AO356_19305at 4331.814 kb on + strand, within AO356_19305at 4331.814 kb on + strand, within AO356_19305at 4331.815 kb on - strand, within AO356_19305at 4331.815 kb on - strand, within AO356_19305at 4331.815 kb on - strand, within AO356_19305at 4331.815 kb on - strand, within AO356_19305at 4332.073 kb on + strandat 4332.073 kb on + strandat 4332.073 kb on + strandat 4332.073 kb on + strandat 4332.074 kb on - strandat 4332.079 kb on + strandat 4332.079 kb on + strandat 4332.079 kb on + strandat 4332.079 kb on + strandat 4332.080 kb on - strandat 4332.108 kb on + strandat 4332.108 kb on + strandat 4332.108 kb on + strandat 4332.108 kb on + strandat 4332.108 kb on + strandat 4332.109 kb on - strandat 4332.109 kb on - strandat 4332.109 kb on - strandat 4332.109 kb on - strandat 4332.148 kb on + strandat 4332.149 kb on - strandat 4332.149 kb on - strandat 4332.199 kb on - strand, within AO356_19310at 4332.304 kb on + strand, within AO356_19310at 4332.305 kb on - strand, within AO356_19310at 4332.305 kb on - strand, within AO356_19310at 4332.358 kb on + strand, within AO356_19310at 4332.358 kb on + strand, within AO356_19310at 4332.359 kb on - strand, within AO356_19310at 4332.359 kb on - strand, within AO356_19310at 4332.362 kb on + strand, within AO356_19310at 4332.362 kb on + strand, within AO356_19310at 4332.363 kb on - strand, within AO356_19310at 4332.363 kb on - strand, within AO356_19310at 4332.363 kb on - strand, within AO356_19310at 4332.375 kb on + strand, within AO356_19310at 4332.375 kb on + strand, within AO356_19310at 4332.376 kb on - strand, within AO356_19310at 4332.376 kb on - strand, within AO356_19310at 4332.376 kb on - strand, within AO356_19310at 4332.376 kb on - strand, within AO356_19310at 4332.480 kb on + strandat 4332.480 kb on + strandat 4332.480 kb on + strandat 4332.481 kb on - strandat 4332.549 kb on + strand, within AO356_19315at 4332.549 kb on + strand, within AO356_19315at 4332.549 kb on + strand, within AO356_19315at 4332.550 kb on - strand, within AO356_19315at 4332.557 kb on + strand, within AO356_19315at 4332.558 kb on - strand, within AO356_19315at 4332.815 kb on + strandat 4332.815 kb on + strandat 4332.998 kb on + strand, within AO356_19320at 4332.999 kb on - strand, within AO356_19320at 4333.129 kb on + strand, within AO356_19320at 4333.130 kb on - strand, within AO356_19320at 4333.261 kb on + strandat 4333.262 kb on - strandat 4333.299 kb on + strandat 4333.300 kb on - strandat 4333.326 kb on + strandat 4333.326 kb on + strandat 4333.327 kb on - strandat 4333.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,331,146 + AO356_19300 0.81 +0.7
4,331,146 + AO356_19300 0.81 -0.2
4,331,146 + AO356_19300 0.81 -0.1
4,331,146 + AO356_19300 0.81 +0.4
4,331,147 - AO356_19300 0.81 +0.2
4,331,147 - AO356_19300 0.81 +0.2
4,331,147 - AO356_19300 0.81 +0.6
4,331,155 + AO356_19300 0.82 -1.3
4,331,155 + AO356_19300 0.82 +0.1
4,331,155 + AO356_19300 0.82 +0.5
4,331,155 + AO356_19300 0.82 -1.3
4,331,155 + AO356_19300 0.82 +0.0
4,331,155 + AO356_19300 0.82 +0.1
4,331,155 + AO356_19300 0.82 -0.0
4,331,156 - AO356_19300 0.82 +0.7
4,331,156 - AO356_19300 0.82 +0.0
4,331,156 - AO356_19300 0.82 +0.2
4,331,156 - AO356_19300 0.82 +0.6
4,331,177 - AO356_19300 0.85 +0.1
4,331,281 + +2.6
4,331,282 - -0.1
4,331,282 - -0.3
4,331,282 - +0.2
4,331,294 + +0.1
4,331,294 + +0.4
4,331,294 + +0.6
4,331,294 + +0.3
4,331,294 + -0.1
4,331,295 - +0.2
4,331,379 + +0.9
4,331,380 - -0.2
4,331,380 - -1.7
4,331,387 + +0.2
4,331,387 + +0.0
4,331,388 - -0.3
4,331,388 - +1.6
4,331,388 - +0.6
4,331,394 + -1.1
4,331,394 + +0.1
4,331,394 + -0.3
4,331,395 - +2.0
4,331,395 - +0.1
4,331,395 - +1.2
4,331,439 + +0.5
4,331,453 - -0.5
4,331,749 - AO356_19305 0.38 -0.2
4,331,814 + AO356_19305 0.52 -0.8
4,331,814 + AO356_19305 0.52 +0.7
4,331,814 + AO356_19305 0.52 +0.5
4,331,814 + AO356_19305 0.52 +0.2
4,331,814 + AO356_19305 0.52 -0.3
4,331,815 - AO356_19305 0.52 +0.1
4,331,815 - AO356_19305 0.52 -0.3
4,331,815 - AO356_19305 0.52 +0.2
4,331,815 - AO356_19305 0.52 -0.2
4,332,073 + -0.1
4,332,073 + +0.1
4,332,073 + -0.2
4,332,073 + -0.3
4,332,074 - +0.4
4,332,079 + +0.0
4,332,079 + -0.8
4,332,079 + -0.4
4,332,079 + -0.7
4,332,080 - -1.1
4,332,108 + -0.4
4,332,108 + +0.1
4,332,108 + -0.3
4,332,108 + -0.5
4,332,108 + -0.9
4,332,109 - -0.5
4,332,109 - -0.5
4,332,109 - -0.8
4,332,109 - -1.2
4,332,148 + +1.6
4,332,149 - -0.8
4,332,149 - -2.5
4,332,199 - AO356_19310 0.19 -0.6
4,332,304 + AO356_19310 0.49 -0.2
4,332,305 - AO356_19310 0.50 -0.3
4,332,305 - AO356_19310 0.50 -2.3
4,332,358 + AO356_19310 0.65 -0.4
4,332,358 + AO356_19310 0.65 +0.6
4,332,359 - AO356_19310 0.65 -0.8
4,332,359 - AO356_19310 0.65 +0.4
4,332,362 + AO356_19310 0.66 -1.2
4,332,362 + AO356_19310 0.66 +0.2
4,332,363 - AO356_19310 0.67 -0.7
4,332,363 - AO356_19310 0.67 -2.3
4,332,363 - AO356_19310 0.67 -1.2
4,332,375 + AO356_19310 0.70 +0.5
4,332,375 + AO356_19310 0.70 -0.4
4,332,376 - AO356_19310 0.70 -1.3
4,332,376 - AO356_19310 0.70 +0.0
4,332,376 - AO356_19310 0.70 -1.0
4,332,376 - AO356_19310 0.70 +0.8
4,332,480 + -0.7
4,332,480 + -1.5
4,332,480 + -0.1
4,332,481 - -0.4
4,332,549 + AO356_19315 0.20 +0.4
4,332,549 + AO356_19315 0.20 -0.5
4,332,549 + AO356_19315 0.20 -0.6
4,332,550 - AO356_19315 0.21 -1.2
4,332,557 + AO356_19315 0.23 +0.4
4,332,558 - AO356_19315 0.23 -3.3
4,332,815 + +0.3
4,332,815 + -1.5
4,332,998 + AO356_19320 0.38 -0.2
4,332,999 - AO356_19320 0.38 +0.3
4,333,129 + AO356_19320 0.71 +0.2
4,333,130 - AO356_19320 0.71 -0.3
4,333,261 + +0.2
4,333,262 - +1.7
4,333,299 + -0.5
4,333,300 - -0.2
4,333,326 + +0.4
4,333,326 + +0.9
4,333,327 - -0.3
4,333,327 - -0.3

Or see this region's nucleotide sequence