Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18725

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18720 and AO356_18725 are separated by 359 nucleotidesAO356_18725 and AO356_18730 are separated by 201 nucleotides AO356_18720: AO356_18720 - AraC family transcriptional regulator, at 4,205,220 to 4,206,200 _18720 AO356_18725: AO356_18725 - acetylornithine aminotransferase, at 4,206,560 to 4,207,780 _18725 AO356_18730: AO356_18730 - arginine N-succinyltransferase, at 4,207,982 to 4,209,001 _18730 Position (kb) 4206 4207 4208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4205.926 kb on + strand, within AO356_18720at 4205.926 kb on + strand, within AO356_18720at 4205.927 kb on - strand, within AO356_18720at 4205.961 kb on + strand, within AO356_18720at 4205.962 kb on - strand, within AO356_18720at 4205.962 kb on - strand, within AO356_18720at 4205.962 kb on - strand, within AO356_18720at 4205.962 kb on - strand, within AO356_18720at 4205.985 kb on + strand, within AO356_18720at 4205.985 kb on + strand, within AO356_18720at 4205.985 kb on + strand, within AO356_18720at 4205.985 kb on + strand, within AO356_18720at 4205.986 kb on + strand, within AO356_18720at 4205.986 kb on - strand, within AO356_18720at 4205.986 kb on - strand, within AO356_18720at 4205.986 kb on - strand, within AO356_18720at 4205.988 kb on + strand, within AO356_18720at 4205.988 kb on + strand, within AO356_18720at 4205.988 kb on + strand, within AO356_18720at 4205.988 kb on + strand, within AO356_18720at 4205.989 kb on - strand, within AO356_18720at 4206.231 kb on + strandat 4206.232 kb on - strandat 4206.296 kb on + strandat 4206.297 kb on - strandat 4206.411 kb on + strandat 4206.412 kb on - strandat 4206.412 kb on - strandat 4206.456 kb on + strandat 4206.457 kb on - strandat 4206.458 kb on + strandat 4206.458 kb on + strandat 4206.459 kb on - strandat 4206.459 kb on - strandat 4206.503 kb on + strandat 4206.504 kb on - strandat 4206.504 kb on - strandat 4206.504 kb on - strandat 4206.504 kb on - strandat 4206.504 kb on - strandat 4206.504 kb on - strandat 4206.504 kb on - strandat 4206.504 kb on - strandat 4206.504 kb on - strandat 4206.504 kb on - strandat 4206.513 kb on - strandat 4206.620 kb on + strandat 4206.620 kb on + strandat 4206.620 kb on + strandat 4206.620 kb on + strandat 4206.620 kb on + strandat 4206.620 kb on + strandat 4206.620 kb on + strandat 4206.620 kb on + strandat 4206.620 kb on + strandat 4206.620 kb on + strandat 4206.621 kb on - strandat 4206.621 kb on - strandat 4206.621 kb on - strandat 4206.621 kb on - strandat 4206.621 kb on - strandat 4206.621 kb on - strandat 4206.639 kb on + strandat 4206.639 kb on + strandat 4206.639 kb on + strandat 4206.639 kb on + strandat 4206.639 kb on + strandat 4206.639 kb on + strandat 4206.640 kb on - strandat 4206.640 kb on - strandat 4206.640 kb on - strandat 4206.723 kb on + strand, within AO356_18725at 4206.724 kb on - strand, within AO356_18725at 4206.724 kb on - strand, within AO356_18725at 4207.029 kb on - strand, within AO356_18725at 4207.049 kb on - strand, within AO356_18725at 4207.054 kb on + strand, within AO356_18725at 4207.076 kb on + strand, within AO356_18725at 4207.076 kb on + strand, within AO356_18725at 4207.077 kb on - strand, within AO356_18725at 4207.077 kb on - strand, within AO356_18725at 4207.077 kb on - strand, within AO356_18725at 4207.079 kb on - strand, within AO356_18725at 4207.181 kb on + strand, within AO356_18725at 4207.280 kb on + strand, within AO356_18725at 4207.280 kb on + strand, within AO356_18725at 4207.281 kb on - strand, within AO356_18725at 4207.290 kb on - strand, within AO356_18725at 4207.290 kb on - strand, within AO356_18725at 4207.412 kb on + strand, within AO356_18725at 4207.412 kb on + strand, within AO356_18725at 4207.413 kb on - strand, within AO356_18725at 4207.544 kb on + strand, within AO356_18725at 4207.544 kb on + strand, within AO356_18725at 4207.544 kb on + strand, within AO356_18725at 4207.544 kb on + strand, within AO356_18725at 4207.545 kb on - strand, within AO356_18725at 4207.868 kb on + strandat 4207.869 kb on - strandat 4207.869 kb on - strandat 4207.869 kb on - strandat 4207.958 kb on + strandat 4207.959 kb on - strandat 4207.968 kb on + strandat 4207.969 kb on - strandat 4207.969 kb on - strandat 4207.969 kb on - strandat 4207.969 kb on - strandat 4208.025 kb on + strandat 4208.025 kb on + strandat 4208.025 kb on + strandat 4208.156 kb on + strand, within AO356_18730at 4208.243 kb on + strand, within AO356_18730at 4208.243 kb on + strand, within AO356_18730at 4208.244 kb on - strand, within AO356_18730at 4208.360 kb on + strand, within AO356_18730at 4208.361 kb on - strand, within AO356_18730at 4208.361 kb on - strand, within AO356_18730at 4208.481 kb on - strand, within AO356_18730at 4208.481 kb on - strand, within AO356_18730at 4208.546 kb on + strand, within AO356_18730at 4208.546 kb on + strand, within AO356_18730at 4208.546 kb on + strand, within AO356_18730at 4208.546 kb on + strand, within AO356_18730at 4208.546 kb on + strand, within AO356_18730at 4208.546 kb on + strand, within AO356_18730at 4208.547 kb on - strand, within AO356_18730at 4208.547 kb on - strand, within AO356_18730at 4208.547 kb on - strand, within AO356_18730at 4208.584 kb on + strand, within AO356_18730at 4208.585 kb on - strand, within AO356_18730at 4208.621 kb on + strand, within AO356_18730at 4208.621 kb on + strand, within AO356_18730at 4208.621 kb on + strand, within AO356_18730at 4208.621 kb on + strand, within AO356_18730at 4208.621 kb on + strand, within AO356_18730at 4208.621 kb on + strand, within AO356_18730at 4208.621 kb on + strand, within AO356_18730at 4208.622 kb on - strand, within AO356_18730at 4208.622 kb on - strand, within AO356_18730at 4208.622 kb on - strand, within AO356_18730at 4208.622 kb on - strand, within AO356_18730at 4208.622 kb on - strand, within AO356_18730at 4208.622 kb on - strand, within AO356_18730at 4208.729 kb on + strand, within AO356_18730at 4208.729 kb on + strand, within AO356_18730at 4208.729 kb on + strand, within AO356_18730at 4208.729 kb on + strand, within AO356_18730at 4208.730 kb on - strand, within AO356_18730at 4208.730 kb on - strand, within AO356_18730at 4208.730 kb on - strand, within AO356_18730at 4208.730 kb on - strand, within AO356_18730at 4208.730 kb on - strand, within AO356_18730

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,205,926 + AO356_18720 0.72 -0.3
4,205,926 + AO356_18720 0.72 -2.7
4,205,927 - AO356_18720 0.72 -0.5
4,205,961 + AO356_18720 0.76 -0.6
4,205,962 - AO356_18720 0.76 -1.1
4,205,962 - AO356_18720 0.76 +0.1
4,205,962 - AO356_18720 0.76 -0.3
4,205,962 - AO356_18720 0.76 -1.9
4,205,985 + AO356_18720 0.78 -0.8
4,205,985 + AO356_18720 0.78 -3.4
4,205,985 + AO356_18720 0.78 -1.2
4,205,985 + AO356_18720 0.78 +0.0
4,205,986 + AO356_18720 0.78 -0.5
4,205,986 - AO356_18720 0.78 -0.5
4,205,986 - AO356_18720 0.78 -0.3
4,205,986 - AO356_18720 0.78 +0.0
4,205,988 + AO356_18720 0.78 +0.3
4,205,988 + AO356_18720 0.78 -2.4
4,205,988 + AO356_18720 0.78 -0.8
4,205,988 + AO356_18720 0.78 -0.7
4,205,989 - AO356_18720 0.78 -0.4
4,206,231 + +0.7
4,206,232 - -0.0
4,206,296 + +0.3
4,206,297 - +0.2
4,206,411 + -1.0
4,206,412 - +0.7
4,206,412 - +0.9
4,206,456 + -0.2
4,206,457 - +0.5
4,206,458 + -0.9
4,206,458 + -1.3
4,206,459 - +0.4
4,206,459 - -2.2
4,206,503 + -0.9
4,206,504 - +1.1
4,206,504 - +0.3
4,206,504 - +1.3
4,206,504 - -0.4
4,206,504 - +0.9
4,206,504 - +1.9
4,206,504 - -2.9
4,206,504 - -0.6
4,206,504 - +1.1
4,206,504 - +1.0
4,206,513 - +0.0
4,206,620 + +0.5
4,206,620 + -0.7
4,206,620 + +4.1
4,206,620 + -0.2
4,206,620 + +0.6
4,206,620 + +0.9
4,206,620 + +2.3
4,206,620 + +0.8
4,206,620 + +0.6
4,206,620 + +1.1
4,206,621 - +0.4
4,206,621 - +1.4
4,206,621 - +0.3
4,206,621 - +1.7
4,206,621 - +0.7
4,206,621 - +0.3
4,206,639 + -0.5
4,206,639 + +0.2
4,206,639 + +1.7
4,206,639 + +1.3
4,206,639 + +0.6
4,206,639 + +1.6
4,206,640 - +1.3
4,206,640 - +0.3
4,206,640 - +0.3
4,206,723 + AO356_18725 0.13 -0.2
4,206,724 - AO356_18725 0.13 +1.7
4,206,724 - AO356_18725 0.13 +1.6
4,207,029 - AO356_18725 0.38 +0.7
4,207,049 - AO356_18725 0.40 +0.5
4,207,054 + AO356_18725 0.40 +1.4
4,207,076 + AO356_18725 0.42 +1.1
4,207,076 + AO356_18725 0.42 +1.6
4,207,077 - AO356_18725 0.42 +1.3
4,207,077 - AO356_18725 0.42 -1.3
4,207,077 - AO356_18725 0.42 +0.2
4,207,079 - AO356_18725 0.43 +0.2
4,207,181 + AO356_18725 0.51 +1.5
4,207,280 + AO356_18725 0.59 +1.4
4,207,280 + AO356_18725 0.59 +0.8
4,207,281 - AO356_18725 0.59 +2.4
4,207,290 - AO356_18725 0.60 +1.1
4,207,290 - AO356_18725 0.60 -0.7
4,207,412 + AO356_18725 0.70 +1.5
4,207,412 + AO356_18725 0.70 +0.2
4,207,413 - AO356_18725 0.70 +2.0
4,207,544 + AO356_18725 0.81 -2.4
4,207,544 + AO356_18725 0.81 -0.5
4,207,544 + AO356_18725 0.81 +0.4
4,207,544 + AO356_18725 0.81 +1.6
4,207,545 - AO356_18725 0.81 +0.4
4,207,868 + -1.2
4,207,869 - +2.3
4,207,869 - +0.7
4,207,869 - +1.3
4,207,958 + +0.1
4,207,959 - -0.6
4,207,968 + +0.5
4,207,969 - +0.5
4,207,969 - +1.0
4,207,969 - +1.5
4,207,969 - +0.3
4,208,025 + +0.5
4,208,025 + +0.3
4,208,025 + +0.8
4,208,156 + AO356_18730 0.17 +0.8
4,208,243 + AO356_18730 0.26 -0.3
4,208,243 + AO356_18730 0.26 +0.1
4,208,244 - AO356_18730 0.26 +0.2
4,208,360 + AO356_18730 0.37 -0.2
4,208,361 - AO356_18730 0.37 +0.7
4,208,361 - AO356_18730 0.37 +0.4
4,208,481 - AO356_18730 0.49 +1.5
4,208,481 - AO356_18730 0.49 +0.5
4,208,546 + AO356_18730 0.55 -0.3
4,208,546 + AO356_18730 0.55 -0.7
4,208,546 + AO356_18730 0.55 -0.2
4,208,546 + AO356_18730 0.55 -0.8
4,208,546 + AO356_18730 0.55 +1.3
4,208,546 + AO356_18730 0.55 +1.3
4,208,547 - AO356_18730 0.55 -0.3
4,208,547 - AO356_18730 0.55 +1.8
4,208,547 - AO356_18730 0.55 +0.3
4,208,584 + AO356_18730 0.59 +0.3
4,208,585 - AO356_18730 0.59 +0.4
4,208,621 + AO356_18730 0.63 -0.2
4,208,621 + AO356_18730 0.63 +0.6
4,208,621 + AO356_18730 0.63 +0.5
4,208,621 + AO356_18730 0.63 +0.8
4,208,621 + AO356_18730 0.63 -0.7
4,208,621 + AO356_18730 0.63 +1.3
4,208,621 + AO356_18730 0.63 -2.0
4,208,622 - AO356_18730 0.63 +1.8
4,208,622 - AO356_18730 0.63 +1.1
4,208,622 - AO356_18730 0.63 +2.0
4,208,622 - AO356_18730 0.63 +1.6
4,208,622 - AO356_18730 0.63 +1.9
4,208,622 - AO356_18730 0.63 -0.9
4,208,729 + AO356_18730 0.73 -0.4
4,208,729 + AO356_18730 0.73 +0.3
4,208,729 + AO356_18730 0.73 -0.1
4,208,729 + AO356_18730 0.73 +1.0
4,208,730 - AO356_18730 0.73 +0.1
4,208,730 - AO356_18730 0.73 +1.2
4,208,730 - AO356_18730 0.73 +1.1
4,208,730 - AO356_18730 0.73 +1.4
4,208,730 - AO356_18730 0.73 -0.3

Or see this region's nucleotide sequence