Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18595

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18585 and AO356_18590 are separated by 92 nucleotidesAO356_18590 and AO356_18595 are separated by 29 nucleotidesAO356_18595 and AO356_18600 are separated by 189 nucleotides AO356_18585: AO356_18585 - LysR family transcriptional regulator, at 4,179,254 to 4,180,201 _18585 AO356_18590: AO356_18590 - hypothetical protein, at 4,180,294 to 4,180,827 _18590 AO356_18595: AO356_18595 - TetR family transcriptional regulator, at 4,180,857 to 4,181,465 _18595 AO356_18600: AO356_18600 - hydrolase, at 4,181,655 to 4,182,713 _18600 Position (kb) 4180 4181 4182Strain fitness (log2 ratio) -3 -2 -1 0 1at 4179.954 kb on + strand, within AO356_18585at 4179.954 kb on + strand, within AO356_18585at 4179.963 kb on + strand, within AO356_18585at 4179.964 kb on - strand, within AO356_18585at 4180.100 kb on + strand, within AO356_18585at 4180.100 kb on + strand, within AO356_18585at 4180.101 kb on - strand, within AO356_18585at 4180.101 kb on - strand, within AO356_18585at 4180.254 kb on + strandat 4180.256 kb on + strandat 4180.256 kb on + strandat 4180.256 kb on + strandat 4180.256 kb on + strandat 4180.256 kb on + strandat 4180.257 kb on - strandat 4180.257 kb on - strandat 4180.257 kb on - strandat 4180.472 kb on + strand, within AO356_18590at 4180.473 kb on - strand, within AO356_18590at 4180.473 kb on - strand, within AO356_18590at 4180.561 kb on + strand, within AO356_18590at 4180.561 kb on + strand, within AO356_18590at 4180.767 kb on + strand, within AO356_18590at 4180.825 kb on + strandat 4180.825 kb on + strandat 4180.977 kb on + strand, within AO356_18595at 4181.236 kb on + strand, within AO356_18595at 4181.236 kb on + strand, within AO356_18595at 4181.236 kb on + strand, within AO356_18595at 4181.237 kb on - strand, within AO356_18595at 4181.323 kb on + strand, within AO356_18595at 4181.323 kb on + strand, within AO356_18595at 4181.323 kb on + strand, within AO356_18595at 4181.323 kb on + strand, within AO356_18595at 4181.324 kb on - strand, within AO356_18595at 4181.495 kb on + strandat 4181.496 kb on - strandat 4181.496 kb on - strandat 4181.496 kb on - strandat 4181.509 kb on + strandat 4181.510 kb on - strandat 4181.543 kb on - strandat 4181.556 kb on + strandat 4181.556 kb on + strandat 4181.646 kb on + strandat 4181.647 kb on - strandat 4181.701 kb on + strandat 4181.702 kb on - strandat 4181.702 kb on - strandat 4181.725 kb on - strandat 4181.725 kb on - strandat 4182.289 kb on + strand, within AO356_18600at 4182.289 kb on + strand, within AO356_18600at 4182.290 kb on - strand, within AO356_18600at 4182.352 kb on - strand, within AO356_18600at 4182.385 kb on - strand, within AO356_18600at 4182.423 kb on + strand, within AO356_18600at 4182.424 kb on - strand, within AO356_18600at 4182.424 kb on - strand, within AO356_18600at 4182.424 kb on - strand, within AO356_18600at 4182.424 kb on - strand, within AO356_18600at 4182.424 kb on - strand, within AO356_18600at 4182.424 kb on - strand, within AO356_18600at 4182.424 kb on - strand, within AO356_18600at 4182.425 kb on + strand, within AO356_18600at 4182.425 kb on + strand, within AO356_18600at 4182.425 kb on + strand, within AO356_18600at 4182.426 kb on - strand, within AO356_18600

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,179,954 + AO356_18585 0.74 +0.2
4,179,954 + AO356_18585 0.74 -0.2
4,179,963 + AO356_18585 0.75 -0.6
4,179,964 - AO356_18585 0.75 -2.0
4,180,100 + AO356_18585 0.89 +0.8
4,180,100 + AO356_18585 0.89 -0.1
4,180,101 - AO356_18585 0.89 +0.5
4,180,101 - AO356_18585 0.89 -0.2
4,180,254 + -0.8
4,180,256 + +0.2
4,180,256 + -1.3
4,180,256 + +0.0
4,180,256 + -1.5
4,180,256 + +0.3
4,180,257 - +0.7
4,180,257 - +0.4
4,180,257 - -0.1
4,180,472 + AO356_18590 0.33 +0.2
4,180,473 - AO356_18590 0.34 +0.8
4,180,473 - AO356_18590 0.34 +0.2
4,180,561 + AO356_18590 0.50 +0.4
4,180,561 + AO356_18590 0.50 +0.8
4,180,767 + AO356_18590 0.89 -0.4
4,180,825 + -0.1
4,180,825 + -0.5
4,180,977 + AO356_18595 0.20 -1.7
4,181,236 + AO356_18595 0.62 -1.2
4,181,236 + AO356_18595 0.62 -0.7
4,181,236 + AO356_18595 0.62 -0.9
4,181,237 - AO356_18595 0.62 -1.2
4,181,323 + AO356_18595 0.77 -0.4
4,181,323 + AO356_18595 0.77 -1.4
4,181,323 + AO356_18595 0.77 -3.0
4,181,323 + AO356_18595 0.77 -0.7
4,181,324 - AO356_18595 0.77 -0.4
4,181,495 + -0.4
4,181,496 - +0.6
4,181,496 - +0.8
4,181,496 - +0.0
4,181,509 + +0.4
4,181,510 - -0.7
4,181,543 - +0.4
4,181,556 + -0.8
4,181,556 + +0.4
4,181,646 + -0.5
4,181,647 - -1.2
4,181,701 + -0.8
4,181,702 - +0.6
4,181,702 - +0.2
4,181,725 - +0.4
4,181,725 - -0.5
4,182,289 + AO356_18600 0.60 +0.0
4,182,289 + AO356_18600 0.60 +0.5
4,182,290 - AO356_18600 0.60 -0.4
4,182,352 - AO356_18600 0.66 +0.5
4,182,385 - AO356_18600 0.69 +0.3
4,182,423 + AO356_18600 0.73 -0.2
4,182,424 - AO356_18600 0.73 -1.0
4,182,424 - AO356_18600 0.73 -0.6
4,182,424 - AO356_18600 0.73 +0.3
4,182,424 - AO356_18600 0.73 +0.0
4,182,424 - AO356_18600 0.73 +0.5
4,182,424 - AO356_18600 0.73 +0.9
4,182,424 - AO356_18600 0.73 +0.7
4,182,425 + AO356_18600 0.73 +1.0
4,182,425 + AO356_18600 0.73 +1.0
4,182,425 + AO356_18600 0.73 +0.1
4,182,426 - AO356_18600 0.73 -0.5

Or see this region's nucleotide sequence