Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18585 and AO356_18590 are separated by 92 nucleotides AO356_18590 and AO356_18595 are separated by 29 nucleotides AO356_18595 and AO356_18600 are separated by 189 nucleotides
AO356_18585: AO356_18585 - LysR family transcriptional regulator, at 4,179,254 to 4,180,201
_18585
AO356_18590: AO356_18590 - hypothetical protein, at 4,180,294 to 4,180,827
_18590
AO356_18595: AO356_18595 - TetR family transcriptional regulator, at 4,180,857 to 4,181,465
_18595
AO356_18600: AO356_18600 - hydrolase, at 4,181,655 to 4,182,713
_18600
Position (kb)
4180
4181
4182 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4179.954 kb on + strand, within AO356_18585 at 4179.954 kb on + strand, within AO356_18585 at 4179.963 kb on + strand, within AO356_18585 at 4179.964 kb on - strand, within AO356_18585 at 4180.100 kb on + strand, within AO356_18585 at 4180.100 kb on + strand, within AO356_18585 at 4180.101 kb on - strand, within AO356_18585 at 4180.101 kb on - strand, within AO356_18585 at 4180.254 kb on + strand at 4180.256 kb on + strand at 4180.256 kb on + strand at 4180.256 kb on + strand at 4180.256 kb on + strand at 4180.256 kb on + strand at 4180.257 kb on - strand at 4180.257 kb on - strand at 4180.257 kb on - strand at 4180.472 kb on + strand, within AO356_18590 at 4180.473 kb on - strand, within AO356_18590 at 4180.473 kb on - strand, within AO356_18590 at 4180.561 kb on + strand, within AO356_18590 at 4180.561 kb on + strand, within AO356_18590 at 4180.767 kb on + strand, within AO356_18590 at 4180.825 kb on + strand at 4180.825 kb on + strand at 4180.977 kb on + strand, within AO356_18595 at 4181.236 kb on + strand, within AO356_18595 at 4181.236 kb on + strand, within AO356_18595 at 4181.236 kb on + strand, within AO356_18595 at 4181.237 kb on - strand, within AO356_18595 at 4181.323 kb on + strand, within AO356_18595 at 4181.323 kb on + strand, within AO356_18595 at 4181.323 kb on + strand, within AO356_18595 at 4181.323 kb on + strand, within AO356_18595 at 4181.324 kb on - strand, within AO356_18595 at 4181.495 kb on + strand at 4181.496 kb on - strand at 4181.496 kb on - strand at 4181.496 kb on - strand at 4181.509 kb on + strand at 4181.510 kb on - strand at 4181.543 kb on - strand at 4181.556 kb on + strand at 4181.556 kb on + strand at 4181.646 kb on + strand at 4181.647 kb on - strand at 4181.701 kb on + strand at 4181.702 kb on - strand at 4181.702 kb on - strand at 4181.725 kb on - strand at 4181.725 kb on - strand at 4182.289 kb on + strand, within AO356_18600 at 4182.289 kb on + strand, within AO356_18600 at 4182.290 kb on - strand, within AO356_18600 at 4182.352 kb on - strand, within AO356_18600 at 4182.385 kb on - strand, within AO356_18600 at 4182.423 kb on + strand, within AO356_18600 at 4182.424 kb on - strand, within AO356_18600 at 4182.424 kb on - strand, within AO356_18600 at 4182.424 kb on - strand, within AO356_18600 at 4182.424 kb on - strand, within AO356_18600 at 4182.424 kb on - strand, within AO356_18600 at 4182.424 kb on - strand, within AO356_18600 at 4182.424 kb on - strand, within AO356_18600 at 4182.425 kb on + strand, within AO356_18600 at 4182.425 kb on + strand, within AO356_18600 at 4182.425 kb on + strand, within AO356_18600 at 4182.426 kb on - strand, within AO356_18600
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 4,179,954 + AO356_18585 0.74 +0.2 4,179,954 + AO356_18585 0.74 -0.2 4,179,963 + AO356_18585 0.75 -0.6 4,179,964 - AO356_18585 0.75 -2.0 4,180,100 + AO356_18585 0.89 +0.8 4,180,100 + AO356_18585 0.89 -0.1 4,180,101 - AO356_18585 0.89 +0.5 4,180,101 - AO356_18585 0.89 -0.2 4,180,254 + -0.8 4,180,256 + +0.2 4,180,256 + -1.3 4,180,256 + +0.0 4,180,256 + -1.5 4,180,256 + +0.3 4,180,257 - +0.7 4,180,257 - +0.4 4,180,257 - -0.1 4,180,472 + AO356_18590 0.33 +0.2 4,180,473 - AO356_18590 0.34 +0.8 4,180,473 - AO356_18590 0.34 +0.2 4,180,561 + AO356_18590 0.50 +0.4 4,180,561 + AO356_18590 0.50 +0.8 4,180,767 + AO356_18590 0.89 -0.4 4,180,825 + -0.1 4,180,825 + -0.5 4,180,977 + AO356_18595 0.20 -1.7 4,181,236 + AO356_18595 0.62 -1.2 4,181,236 + AO356_18595 0.62 -0.7 4,181,236 + AO356_18595 0.62 -0.9 4,181,237 - AO356_18595 0.62 -1.2 4,181,323 + AO356_18595 0.77 -0.4 4,181,323 + AO356_18595 0.77 -1.4 4,181,323 + AO356_18595 0.77 -3.0 4,181,323 + AO356_18595 0.77 -0.7 4,181,324 - AO356_18595 0.77 -0.4 4,181,495 + -0.4 4,181,496 - +0.6 4,181,496 - +0.8 4,181,496 - +0.0 4,181,509 + +0.4 4,181,510 - -0.7 4,181,543 - +0.4 4,181,556 + -0.8 4,181,556 + +0.4 4,181,646 + -0.5 4,181,647 - -1.2 4,181,701 + -0.8 4,181,702 - +0.6 4,181,702 - +0.2 4,181,725 - +0.4 4,181,725 - -0.5 4,182,289 + AO356_18600 0.60 +0.0 4,182,289 + AO356_18600 0.60 +0.5 4,182,290 - AO356_18600 0.60 -0.4 4,182,352 - AO356_18600 0.66 +0.5 4,182,385 - AO356_18600 0.69 +0.3 4,182,423 + AO356_18600 0.73 -0.2 4,182,424 - AO356_18600 0.73 -1.0 4,182,424 - AO356_18600 0.73 -0.6 4,182,424 - AO356_18600 0.73 +0.3 4,182,424 - AO356_18600 0.73 +0.0 4,182,424 - AO356_18600 0.73 +0.5 4,182,424 - AO356_18600 0.73 +0.9 4,182,424 - AO356_18600 0.73 +0.7 4,182,425 + AO356_18600 0.73 +1.0 4,182,425 + AO356_18600 0.73 +1.0 4,182,425 + AO356_18600 0.73 +0.1 4,182,426 - AO356_18600 0.73 -0.5
Or see this region's nucleotide sequence