Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18535

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18530 and AO356_18535 are separated by 164 nucleotidesAO356_18535 and AO356_18540 overlap by 4 nucleotides AO356_18530: AO356_18530 - L-tyrosine transporter (from data), at 4,168,938 to 4,170,353 _18530 AO356_18535: AO356_18535 - class I peptide chain release factor, at 4,170,518 to 4,170,931 _18535 AO356_18540: AO356_18540 - MFS transporter, at 4,170,928 to 4,172,127 _18540 Position (kb) 4170 4171Strain fitness (log2 ratio) -1 0 1 2at 4169.682 kb on + strand, within AO356_18530at 4169.682 kb on + strand, within AO356_18530at 4169.682 kb on + strand, within AO356_18530at 4169.683 kb on - strand, within AO356_18530at 4169.763 kb on + strand, within AO356_18530at 4169.764 kb on - strand, within AO356_18530at 4169.822 kb on + strand, within AO356_18530at 4169.823 kb on - strand, within AO356_18530at 4169.862 kb on + strand, within AO356_18530at 4169.862 kb on + strand, within AO356_18530at 4169.863 kb on - strand, within AO356_18530at 4169.863 kb on - strand, within AO356_18530at 4169.863 kb on - strand, within AO356_18530at 4169.863 kb on - strand, within AO356_18530at 4169.877 kb on + strand, within AO356_18530at 4169.877 kb on + strand, within AO356_18530at 4169.877 kb on + strand, within AO356_18530at 4169.878 kb on - strand, within AO356_18530at 4169.878 kb on - strand, within AO356_18530at 4169.878 kb on - strand, within AO356_18530at 4169.878 kb on - strand, within AO356_18530at 4169.966 kb on - strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.099 kb on + strand, within AO356_18530at 4170.099 kb on + strand, within AO356_18530at 4170.100 kb on - strand, within AO356_18530at 4170.100 kb on - strand, within AO356_18530at 4170.100 kb on - strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.294 kb on + strandat 4170.294 kb on + strandat 4170.294 kb on + strandat 4170.295 kb on - strandat 4170.295 kb on - strandat 4170.295 kb on - strandat 4170.351 kb on + strandat 4170.351 kb on + strandat 4170.351 kb on + strandat 4170.351 kb on + strandat 4170.352 kb on - strandat 4170.352 kb on - strandat 4170.352 kb on - strandat 4170.352 kb on - strandat 4170.352 kb on - strandat 4170.405 kb on + strandat 4170.405 kb on + strandat 4170.459 kb on + strandat 4170.460 kb on - strandat 4170.671 kb on + strand, within AO356_18535at 4170.671 kb on + strand, within AO356_18535at 4170.672 kb on - strand, within AO356_18535at 4170.672 kb on - strand, within AO356_18535at 4170.747 kb on - strand, within AO356_18535at 4170.747 kb on - strand, within AO356_18535at 4170.977 kb on + strandat 4170.978 kb on - strandat 4170.978 kb on - strandat 4170.978 kb on - strandat 4171.110 kb on - strand, within AO356_18540at 4171.409 kb on + strand, within AO356_18540at 4171.409 kb on + strand, within AO356_18540at 4171.409 kb on + strand, within AO356_18540at 4171.410 kb on - strand, within AO356_18540at 4171.410 kb on - strand, within AO356_18540at 4171.410 kb on - strand, within AO356_18540at 4171.412 kb on + strand, within AO356_18540at 4171.413 kb on - strand, within AO356_18540at 4171.701 kb on + strand, within AO356_18540at 4171.928 kb on + strand, within AO356_18540at 4171.928 kb on + strand, within AO356_18540at 4171.929 kb on - strand, within AO356_18540

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,169,682 + AO356_18530 0.53 +1.8
4,169,682 + AO356_18530 0.53 +0.7
4,169,682 + AO356_18530 0.53 +1.4
4,169,683 - AO356_18530 0.53 +0.1
4,169,763 + AO356_18530 0.58 +1.1
4,169,764 - AO356_18530 0.58 +0.7
4,169,822 + AO356_18530 0.62 +0.1
4,169,823 - AO356_18530 0.62 +0.8
4,169,862 + AO356_18530 0.65 +2.0
4,169,862 + AO356_18530 0.65 +0.1
4,169,863 - AO356_18530 0.65 +0.1
4,169,863 - AO356_18530 0.65 +0.9
4,169,863 - AO356_18530 0.65 +0.6
4,169,863 - AO356_18530 0.65 +0.5
4,169,877 + AO356_18530 0.66 +0.8
4,169,877 + AO356_18530 0.66 -0.8
4,169,877 + AO356_18530 0.66 -0.2
4,169,878 - AO356_18530 0.66 +1.5
4,169,878 - AO356_18530 0.66 +2.4
4,169,878 - AO356_18530 0.66 +0.7
4,169,878 - AO356_18530 0.66 +1.2
4,169,966 - AO356_18530 0.73 +0.8
4,170,018 + AO356_18530 0.76 +0.8
4,170,018 + AO356_18530 0.76 +1.9
4,170,018 + AO356_18530 0.76 +0.7
4,170,018 + AO356_18530 0.76 +1.0
4,170,018 + AO356_18530 0.76 +0.6
4,170,099 + AO356_18530 0.82 +1.0
4,170,099 + AO356_18530 0.82 +0.5
4,170,100 - AO356_18530 0.82 +0.2
4,170,100 - AO356_18530 0.82 +0.6
4,170,100 - AO356_18530 0.82 +1.3
4,170,183 + AO356_18530 0.88 +2.2
4,170,183 + AO356_18530 0.88 -0.2
4,170,183 + AO356_18530 0.88 +0.8
4,170,183 + AO356_18530 0.88 +0.3
4,170,183 + AO356_18530 0.88 +0.7
4,170,183 + AO356_18530 0.88 +0.9
4,170,184 - AO356_18530 0.88 +0.7
4,170,184 - AO356_18530 0.88 +0.7
4,170,184 - AO356_18530 0.88 -1.3
4,170,184 - AO356_18530 0.88 +1.6
4,170,184 - AO356_18530 0.88 +0.7
4,170,184 - AO356_18530 0.88 +1.6
4,170,294 + -0.3
4,170,294 + +0.6
4,170,294 + +1.9
4,170,295 - +0.3
4,170,295 - +1.8
4,170,295 - +0.1
4,170,351 + +0.3
4,170,351 + -0.4
4,170,351 + +0.7
4,170,351 + +0.2
4,170,352 - +1.5
4,170,352 - +0.8
4,170,352 - +0.6
4,170,352 - -0.1
4,170,352 - -0.8
4,170,405 + +0.5
4,170,405 + -0.6
4,170,459 + +0.1
4,170,460 - +1.0
4,170,671 + AO356_18535 0.37 -1.3
4,170,671 + AO356_18535 0.37 -0.3
4,170,672 - AO356_18535 0.37 +0.8
4,170,672 - AO356_18535 0.37 -0.2
4,170,747 - AO356_18535 0.55 +0.8
4,170,747 - AO356_18535 0.55 +0.5
4,170,977 + -0.3
4,170,978 - +0.5
4,170,978 - -0.0
4,170,978 - -0.5
4,171,110 - AO356_18540 0.15 +0.6
4,171,409 + AO356_18540 0.40 +0.6
4,171,409 + AO356_18540 0.40 -0.1
4,171,409 + AO356_18540 0.40 +1.3
4,171,410 - AO356_18540 0.40 +0.6
4,171,410 - AO356_18540 0.40 -0.1
4,171,410 - AO356_18540 0.40 +0.5
4,171,412 + AO356_18540 0.40 +0.8
4,171,413 - AO356_18540 0.40 -0.1
4,171,701 + AO356_18540 0.64 +0.2
4,171,928 + AO356_18540 0.83 -0.2
4,171,928 + AO356_18540 0.83 -1.3
4,171,929 - AO356_18540 0.83 +0.8

Or see this region's nucleotide sequence