Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18155

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_18145 and AO356_18150 are separated by 106 nucleotidesAO356_18150 and AO356_18155 are separated by 94 nucleotidesAO356_18155 and AO356_18160 are separated by 395 nucleotides AO356_18145: AO356_18145 - quinolinate synthase A, at 4,088,968 to 4,090,026 _18145 AO356_18150: AO356_18150 - hypothetical protein, at 4,090,133 to 4,090,621 _18150 AO356_18155: AO356_18155 - cold-shock protein, at 4,090,716 to 4,090,928 _18155 AO356_18160: AO356_18160 - glycine cleavage system protein T, at 4,091,324 to 4,092,448 _18160 Position (kb) 4090 4091Strain fitness (log2 ratio) -1 0 1 2at 4090.072 kb on + strandat 4090.134 kb on + strandat 4090.135 kb on - strandat 4090.176 kb on + strandat 4090.176 kb on + strandat 4090.177 kb on - strandat 4090.316 kb on + strand, within AO356_18150at 4090.317 kb on - strand, within AO356_18150at 4090.497 kb on + strand, within AO356_18150at 4090.497 kb on + strand, within AO356_18150at 4090.652 kb on + strandat 4090.660 kb on + strandat 4090.660 kb on + strandat 4090.701 kb on + strandat 4090.701 kb on + strandat 4090.702 kb on - strandat 4090.868 kb on + strand, within AO356_18155at 4090.869 kb on - strand, within AO356_18155at 4090.934 kb on + strandat 4090.984 kb on - strandat 4091.006 kb on + strandat 4091.006 kb on + strandat 4091.027 kb on + strandat 4091.028 kb on - strandat 4091.028 kb on - strandat 4091.039 kb on + strandat 4091.039 kb on + strandat 4091.039 kb on + strandat 4091.040 kb on - strandat 4091.040 kb on - strandat 4091.044 kb on + strandat 4091.045 kb on - strandat 4091.045 kb on - strandat 4091.045 kb on - strandat 4091.045 kb on - strandat 4091.045 kb on - strandat 4091.098 kb on - strandat 4091.165 kb on - strandat 4091.200 kb on - strandat 4091.221 kb on + strandat 4091.221 kb on + strandat 4091.221 kb on + strandat 4091.221 kb on + strandat 4091.221 kb on + strandat 4091.222 kb on - strandat 4091.223 kb on + strandat 4091.223 kb on + strandat 4091.224 kb on - strandat 4091.224 kb on - strandat 4091.224 kb on - strandat 4091.241 kb on + strandat 4091.241 kb on + strandat 4091.242 kb on - strandat 4091.248 kb on - strandat 4091.248 kb on - strandat 4091.248 kb on - strandat 4091.248 kb on - strandat 4091.280 kb on + strandat 4091.289 kb on + strandat 4091.289 kb on + strandat 4091.289 kb on + strandat 4091.290 kb on - strandat 4091.290 kb on - strandat 4091.305 kb on + strandat 4091.306 kb on - strandat 4091.309 kb on + strandat 4091.309 kb on + strandat 4091.310 kb on - strandat 4091.310 kb on - strandat 4091.312 kb on - strandat 4091.335 kb on - strandat 4091.337 kb on + strandat 4091.337 kb on + strandat 4091.367 kb on - strandat 4091.367 kb on - strandat 4091.367 kb on - strandat 4091.367 kb on - strandat 4091.427 kb on + strandat 4091.427 kb on + strandat 4091.427 kb on + strandat 4091.427 kb on + strandat 4091.427 kb on + strandat 4091.428 kb on - strandat 4091.428 kb on - strandat 4091.428 kb on - strandat 4091.428 kb on - strandat 4091.730 kb on + strand, within AO356_18160at 4091.730 kb on + strand, within AO356_18160at 4091.731 kb on - strand, within AO356_18160at 4091.874 kb on + strand, within AO356_18160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
4,090,072 + -1.4
4,090,134 + +0.5
4,090,135 - +0.6
4,090,176 + -0.1
4,090,176 + +0.7
4,090,177 - -0.5
4,090,316 + AO356_18150 0.37 +0.7
4,090,317 - AO356_18150 0.38 +0.7
4,090,497 + AO356_18150 0.74 -0.8
4,090,497 + AO356_18150 0.74 +0.1
4,090,652 + +1.2
4,090,660 + -0.1
4,090,660 + -0.2
4,090,701 + +0.8
4,090,701 + +1.3
4,090,702 - -0.5
4,090,868 + AO356_18155 0.71 -0.1
4,090,869 - AO356_18155 0.72 -0.8
4,090,934 + -0.8
4,090,984 - +0.8
4,091,006 + +0.1
4,091,006 + +1.3
4,091,027 + -0.6
4,091,028 - -1.2
4,091,028 - +0.0
4,091,039 + +0.5
4,091,039 + -0.9
4,091,039 + +0.1
4,091,040 - -0.1
4,091,040 - -1.4
4,091,044 + -0.2
4,091,045 - -0.3
4,091,045 - +0.6
4,091,045 - +0.4
4,091,045 - -0.3
4,091,045 - -0.4
4,091,098 - -0.2
4,091,165 - -1.5
4,091,200 - -0.3
4,091,221 + +0.6
4,091,221 + +1.6
4,091,221 + +0.1
4,091,221 + +0.0
4,091,221 + -0.5
4,091,222 - -0.6
4,091,223 + +0.1
4,091,223 + -0.2
4,091,224 - -0.5
4,091,224 - +1.0
4,091,224 - +0.8
4,091,241 + -1.2
4,091,241 + -0.8
4,091,242 - -0.2
4,091,248 - +0.0
4,091,248 - +0.7
4,091,248 - -1.0
4,091,248 - -0.4
4,091,280 + +0.5
4,091,289 + +0.1
4,091,289 + +1.1
4,091,289 + +0.6
4,091,290 - -0.1
4,091,290 - +1.8
4,091,305 + +0.5
4,091,306 - -0.4
4,091,309 + +0.7
4,091,309 + -0.1
4,091,310 - +0.1
4,091,310 - -0.0
4,091,312 - -1.5
4,091,335 - +0.5
4,091,337 + -0.2
4,091,337 + +1.1
4,091,367 - -1.0
4,091,367 - +0.5
4,091,367 - +0.6
4,091,367 - -0.3
4,091,427 + -0.8
4,091,427 + -0.5
4,091,427 + +0.3
4,091,427 + -0.3
4,091,427 + +1.3
4,091,428 - +0.9
4,091,428 - +0.2
4,091,428 - +0.1
4,091,428 - -0.9
4,091,730 + AO356_18160 0.36 -0.2
4,091,730 + AO356_18160 0.36 -0.5
4,091,731 - AO356_18160 0.36 +0.2
4,091,874 + AO356_18160 0.49 +0.7

Or see this region's nucleotide sequence