Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18025

Experiment: Thallium(I) acetate 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_18015 and AO356_18020 are separated by 114 nucleotidesAO356_18020 and AO356_18025 are separated by 0 nucleotidesAO356_18025 and AO356_18030 are separated by 127 nucleotidesAO356_18030 and AO356_18035 overlap by 11 nucleotides AO356_18015: AO356_18015 - crossover junction endodeoxyribonuclease RuvC, at 4,064,508 to 4,065,032 _18015 AO356_18020: AO356_18020 - ATP-dependent DNA helicase RuvA, at 4,065,147 to 4,065,755 _18020 AO356_18025: AO356_18025 - ATP-dependent DNA helicase RuvB, at 4,065,756 to 4,066,817 _18025 AO356_18030: AO356_18030 - 4-hydroxybenzoyl-CoA thioesterase, at 4,066,945 to 4,067,412 _18030 AO356_18035: AO356_18035 - protein TolQ, at 4,067,402 to 4,068,097 _18035 Position (kb) 4065 4066 4067Strain fitness (log2 ratio) -2 -1 0 1at 4065.033 kb on + strandat 4065.034 kb on - strandat 4065.103 kb on + strandat 4065.208 kb on + strand, within AO356_18020at 4065.222 kb on + strand, within AO356_18020at 4065.222 kb on + strand, within AO356_18020at 4065.322 kb on + strand, within AO356_18020at 4065.322 kb on + strand, within AO356_18020at 4065.322 kb on + strand, within AO356_18020at 4065.322 kb on + strand, within AO356_18020at 4065.323 kb on - strand, within AO356_18020at 4065.657 kb on + strand, within AO356_18020at 4065.658 kb on - strand, within AO356_18020at 4065.753 kb on + strandat 4065.753 kb on + strandat 4065.754 kb on - strandat 4065.852 kb on + strandat 4066.087 kb on + strand, within AO356_18025at 4066.311 kb on + strand, within AO356_18025at 4066.390 kb on - strand, within AO356_18025at 4066.390 kb on - strand, within AO356_18025at 4066.690 kb on - strand, within AO356_18025at 4066.734 kb on + strandat 4066.734 kb on + strandat 4066.734 kb on + strandat 4066.735 kb on - strandat 4066.735 kb on - strandat 4066.750 kb on + strandat 4066.751 kb on - strandat 4066.786 kb on + strandat 4066.828 kb on + strandat 4066.829 kb on - strandat 4066.829 kb on - strandat 4066.932 kb on + strandat 4066.932 kb on + strandat 4066.932 kb on + strandat 4066.932 kb on + strandat 4066.932 kb on + strandat 4066.939 kb on + strandat 4066.939 kb on + strandat 4066.939 kb on + strandat 4066.939 kb on + strandat 4066.939 kb on + strandat 4066.939 kb on + strandat 4066.944 kb on + strandat 4066.944 kb on + strandat 4066.944 kb on + strandat 4067.026 kb on + strand, within AO356_18030at 4067.026 kb on + strand, within AO356_18030at 4067.026 kb on + strand, within AO356_18030at 4067.026 kb on + strand, within AO356_18030at 4067.026 kb on + strand, within AO356_18030at 4067.026 kb on + strand, within AO356_18030at 4067.038 kb on + strand, within AO356_18030at 4067.038 kb on + strand, within AO356_18030at 4067.038 kb on + strand, within AO356_18030at 4067.049 kb on + strand, within AO356_18030at 4067.123 kb on + strand, within AO356_18030at 4067.123 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.189 kb on + strand, within AO356_18030at 4067.253 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.310 kb on + strand, within AO356_18030at 4067.342 kb on + strand, within AO356_18030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
remove
4,065,033 + +0.6
4,065,034 - -0.4
4,065,103 + -1.3
4,065,208 + AO356_18020 0.10 -1.3
4,065,222 + AO356_18020 0.12 -0.4
4,065,222 + AO356_18020 0.12 +0.3
4,065,322 + AO356_18020 0.29 +0.1
4,065,322 + AO356_18020 0.29 -1.4
4,065,322 + AO356_18020 0.29 -0.1
4,065,322 + AO356_18020 0.29 -0.7
4,065,323 - AO356_18020 0.29 +0.1
4,065,657 + AO356_18020 0.84 +0.7
4,065,658 - AO356_18020 0.84 -0.5
4,065,753 + +1.5
4,065,753 + +1.3
4,065,754 - +0.9
4,065,852 + +0.3
4,066,087 + AO356_18025 0.31 +0.9
4,066,311 + AO356_18025 0.52 -1.1
4,066,390 - AO356_18025 0.60 +0.3
4,066,390 - AO356_18025 0.60 -0.0
4,066,690 - AO356_18025 0.88 -0.1
4,066,734 + -2.0
4,066,734 + -1.7
4,066,734 + -1.1
4,066,735 - +0.1
4,066,735 - -0.3
4,066,750 + +0.8
4,066,751 - -1.3
4,066,786 + -1.1
4,066,828 + +0.6
4,066,829 - -1.5
4,066,829 - -0.2
4,066,932 + +0.2
4,066,932 + +1.2
4,066,932 + +0.6
4,066,932 + +0.1
4,066,932 + -0.1
4,066,939 + -0.7
4,066,939 + +0.2
4,066,939 + -1.7
4,066,939 + -0.2
4,066,939 + +0.0
4,066,939 + +0.1
4,066,944 + -0.5
4,066,944 + +0.1
4,066,944 + -1.2
4,067,026 + AO356_18030 0.17 +0.5
4,067,026 + AO356_18030 0.17 -0.5
4,067,026 + AO356_18030 0.17 -0.1
4,067,026 + AO356_18030 0.17 -0.5
4,067,026 + AO356_18030 0.17 +0.5
4,067,026 + AO356_18030 0.17 +0.1
4,067,038 + AO356_18030 0.20 +0.3
4,067,038 + AO356_18030 0.20 +0.3
4,067,038 + AO356_18030 0.20 -0.4
4,067,049 + AO356_18030 0.22 -0.2
4,067,123 + AO356_18030 0.38 +0.3
4,067,123 + AO356_18030 0.38 +0.8
4,067,189 + AO356_18030 0.52 -0.3
4,067,189 + AO356_18030 0.52 +0.3
4,067,189 + AO356_18030 0.52 +1.0
4,067,189 + AO356_18030 0.52 -0.1
4,067,189 + AO356_18030 0.52 -0.9
4,067,189 + AO356_18030 0.52 +0.6
4,067,253 + AO356_18030 0.66 +1.0
4,067,310 + AO356_18030 0.78 -1.8
4,067,310 + AO356_18030 0.78 +0.5
4,067,310 + AO356_18030 0.78 -0.0
4,067,310 + AO356_18030 0.78 -0.8
4,067,310 + AO356_18030 0.78 -0.1
4,067,342 + AO356_18030 0.85 -0.2

Or see this region's nucleotide sequence