Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18020

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18010 and AO356_18015 are separated by 152 nucleotidesAO356_18015 and AO356_18020 are separated by 114 nucleotidesAO356_18020 and AO356_18025 are separated by 0 nucleotides AO356_18010: AO356_18010 - hypothetical protein, at 4,063,609 to 4,064,355 _18010 AO356_18015: AO356_18015 - crossover junction endodeoxyribonuclease RuvC, at 4,064,508 to 4,065,032 _18015 AO356_18020: AO356_18020 - ATP-dependent DNA helicase RuvA, at 4,065,147 to 4,065,755 _18020 AO356_18025: AO356_18025 - ATP-dependent DNA helicase RuvB, at 4,065,756 to 4,066,817 _18025 Position (kb) 4065 4066Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4064.149 kb on + strand, within AO356_18010at 4064.149 kb on + strand, within AO356_18010at 4064.149 kb on + strand, within AO356_18010at 4064.149 kb on + strand, within AO356_18010at 4064.149 kb on + strand, within AO356_18010at 4064.150 kb on - strand, within AO356_18010at 4064.150 kb on - strand, within AO356_18010at 4064.150 kb on - strand, within AO356_18010at 4064.150 kb on - strand, within AO356_18010at 4064.150 kb on - strand, within AO356_18010at 4064.308 kb on + strandat 4064.309 kb on - strandat 4064.367 kb on + strandat 4064.367 kb on + strandat 4064.368 kb on - strandat 4064.368 kb on - strandat 4064.414 kb on + strandat 4064.414 kb on + strandat 4064.414 kb on + strandat 4064.415 kb on - strandat 4064.415 kb on - strandat 4064.415 kb on - strandat 4064.516 kb on - strandat 4064.516 kb on - strandat 4064.590 kb on - strand, within AO356_18015at 4064.590 kb on - strand, within AO356_18015at 4064.683 kb on - strand, within AO356_18015at 4065.033 kb on + strandat 4065.034 kb on - strandat 4065.103 kb on + strandat 4065.208 kb on + strand, within AO356_18020at 4065.222 kb on + strand, within AO356_18020at 4065.222 kb on + strand, within AO356_18020at 4065.322 kb on + strand, within AO356_18020at 4065.322 kb on + strand, within AO356_18020at 4065.322 kb on + strand, within AO356_18020at 4065.322 kb on + strand, within AO356_18020at 4065.323 kb on - strand, within AO356_18020at 4065.657 kb on + strand, within AO356_18020at 4065.658 kb on - strand, within AO356_18020at 4065.753 kb on + strandat 4065.753 kb on + strandat 4065.754 kb on - strandat 4065.852 kb on + strandat 4066.087 kb on + strand, within AO356_18025at 4066.311 kb on + strand, within AO356_18025at 4066.390 kb on - strand, within AO356_18025at 4066.390 kb on - strand, within AO356_18025at 4066.690 kb on - strand, within AO356_18025at 4066.734 kb on + strandat 4066.734 kb on + strandat 4066.734 kb on + strandat 4066.735 kb on - strandat 4066.735 kb on - strandat 4066.750 kb on + strandat 4066.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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4,064,149 + AO356_18010 0.72 +0.1
4,064,149 + AO356_18010 0.72 -0.2
4,064,149 + AO356_18010 0.72 -0.1
4,064,149 + AO356_18010 0.72 -0.3
4,064,149 + AO356_18010 0.72 +0.8
4,064,150 - AO356_18010 0.72 +0.7
4,064,150 - AO356_18010 0.72 +0.4
4,064,150 - AO356_18010 0.72 -0.4
4,064,150 - AO356_18010 0.72 -0.1
4,064,150 - AO356_18010 0.72 -0.2
4,064,308 + +2.9
4,064,309 - -0.4
4,064,367 + -0.1
4,064,367 + -1.5
4,064,368 - -1.3
4,064,368 - -0.0
4,064,414 + +0.7
4,064,414 + +0.5
4,064,414 + +0.3
4,064,415 - -1.9
4,064,415 - +0.1
4,064,415 - +1.9
4,064,516 - -1.1
4,064,516 - -1.3
4,064,590 - AO356_18015 0.16 +0.3
4,064,590 - AO356_18015 0.16 +0.9
4,064,683 - AO356_18015 0.33 -1.5
4,065,033 + +0.6
4,065,034 - -0.4
4,065,103 + -1.3
4,065,208 + AO356_18020 0.10 -1.3
4,065,222 + AO356_18020 0.12 -0.4
4,065,222 + AO356_18020 0.12 +0.3
4,065,322 + AO356_18020 0.29 +0.1
4,065,322 + AO356_18020 0.29 -1.4
4,065,322 + AO356_18020 0.29 -0.1
4,065,322 + AO356_18020 0.29 -0.7
4,065,323 - AO356_18020 0.29 +0.1
4,065,657 + AO356_18020 0.84 +0.7
4,065,658 - AO356_18020 0.84 -0.5
4,065,753 + +1.5
4,065,753 + +1.3
4,065,754 - +0.9
4,065,852 + +0.3
4,066,087 + AO356_18025 0.31 +0.9
4,066,311 + AO356_18025 0.52 -1.1
4,066,390 - AO356_18025 0.60 +0.3
4,066,390 - AO356_18025 0.60 -0.0
4,066,690 - AO356_18025 0.88 -0.1
4,066,734 + -2.0
4,066,734 + -1.7
4,066,734 + -1.1
4,066,735 - +0.1
4,066,735 - -0.3
4,066,750 + +0.8
4,066,751 - -1.3

Or see this region's nucleotide sequence